Shapes of things: computer modeling of molecular shape in drug discovery.
We review recent advances in computer modeling of molecular shape in drug discovery. We summarize the ways of representing shape computationally, discuss the various means of aligning molecules and shapes, consider the various ways of scoring similarity of shapes, and describe the ways in which these shapes can be used to construct molecular descriptors. Finally, we evaluate the success of these methods to date, suggest when they are best applied, and provide our recommendations for the direction of future work.
Putta
Santosh
S
Telik, Inc., 3165 Porter Dr., Palo Alto, CA 94304, USA.
Beroza
Paul
P
D003198:Computer Simulation; D015195:Drug Design; D008958:Models, Molecular; D013329:Structure-Activity Relationship