title: Generation and mapping of SCAR and CAPS markers linked to the seed coat color gene in Brassica napus using a genome-walking technique.
abstract: The yellow seed coat trait in No. 2127-17, a resynthesized purely yellow Brassica napus line, is controlled by a single partially dominant gene, Y. A double-haploid population derived from the F1 of No. 2127-17 x 'ZY821' was used to map the seed coat color phenotype. A combination of AFLP analysis and bulked segregant analysis identified 18 AFLP markers linked to the seed coat color trait. The 18 AFLP markers were mapped to a chromosomal region of 37.0 cM with an average of 2.0 cM between adjacent markers. Two markers, AFLP-K and AFLP-H, bracketed the Y locus in an interval of 1.0 cM, such that each was 0.5 cM away from the Y locus. Two other markers, AFLP-A and AFLP-B, co-segregated with the seed color gene. For ease of use in breeding programs, these 4 most tightly linked AFLP markers were converted into reliable PCR-based markers. SCAR-K, which was derived from AFLP-K, was assigned to linkage group 9 (N9) of a B. napus reference map consisting of 150 commonly used SSR (simple sequence repeat) markers. Furthermore, 2 SSR markers (Na14-E08 and Na10-B07) linked to SCAR-K on the reference map were reversely mapped to the linkage map constructed in this study, and also showed linkage to the Y locus. These linked markers would be useful for the transfer of the dominant allele Y from No. 2127-17 to elite cultivars using a marker-assisted selection strategy and would accelerate the cloning of the seed coat color gene.
authors: National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China.
authors: Shushu
authors: S
authors: Xiao
authors: Jinsong
authors: J
authors: Xu
authors: Yuan
authors: Y
authors: Li
authors: Lei
authors: L
authors: Zhang
authors: Shijun
authors: S
authors: Shi
authors: Shuwen
authors: S
authors: Shi
authors: Jiangsheng
authors: J
authors: Wu
authors: Kede
authors: K
authors: Liu
mesh_terms: D029688:Brassica napus / Q000235:genetics*; D002874:Chromosome Mapping; D003116:Color; D018744:DNA, Plant / Q000378:metabolism; D005799:Genes, Dominant; D017343:Genes, Plant; D008040:Genetic Linkage; D005819:Genetic Markers; D018745:Genome, Plant; D019105:Random Amplified Polymorphic DNA Technique; D012639:Seeds / Q000235:genetics*
chemical_list: D018744:DNA, Plant; D005819:Genetic Markers