title: Onconase action on tRNA(Lys3), the primer for HIV-1 reverse transcription.
abstract: Onconase, a cytotoxic and antitumor RNase inhibits viral replication in chronically HIV-1-infected human cells under sub lethal concentrations. Cellular tRNA has been implicated as the target for onconase action. We have recently shown that onconase cleaves selectively at GG residues in the UGG context in the variable loop and D-arm of the tRNA substrates. We therefore examined onconase cleavage specificity in in vitro transcribed tRNA(Lys3), which is the primer for HIV-1 reverse transcription but does not have UGG anywhere in its sequence. Onconase was found to cleave tRNA(Lys3) predominantly at the GG residues in the GGG triplet present in the variable loop. Mutations at this site did not effect onconase cleavages. Interestingly thus, onconase seems to cleave predominantly in the variable loop of tRNA(Lys3) regardless of the sequence context implying possible contribution of even structural determinants for its selective cleavages.
authors: Center for Cellular and Molecular Biology, Uppal Road, Hyderabad 500 007, India.
authors: Avvaru N
authors: AN
authors: Suhasini
authors: Ravi
authors: R
authors: Sirdeshmukh
mesh_terms: D001665:Binding Sites; D017931:DNA Primers / Q000737:chemistry / Q000378:metabolism; D054303:HIV Reverse Transcriptase / Q000737:chemistry* / Q000378:metabolism* / Q000648:ultrastructure; D008956:Models, Chemical; D008958:Models, Molecular; D011485:Protein Binding; D012343:RNA, Transfer / Q000737:chemistry* / Q000378:metabolism* / Q000648:ultrastructure; D048348:Reverse Transcription / Q000502:physiology*; D012260:Ribonucleases / Q000737:chemistry* / Q000378:metabolism* / Q000648:ultrastructure; D013379:Substrate Specificity
chemical_list: D017931:DNA Primers; D012343:RNA, Transfer; D054303:HIV Reverse Transcriptase; D012260:Ribonucleases; C058703:ranpirnase