A biological interpretation of transient anomalous subdiffusion. II. Reaction kinetics.
Reaction kinetics in a cell or cell membrane is modeled in terms of the first passage time for a random walker at a random initial position to reach an immobile target site in the presence of a hierarchy of nonreactive binding sites. Monte Carlo calculations are carried out for the triangular, square, and cubic lattices. The mean capture time is expressed as the product of three factors: the analytical expression of Montroll for the capture time in a system with a single target and no binding sites; an exact expression for the mean escape time from the set of lattice points; and a correction factor for the number of targets present. The correction factor, obtained from Monte Carlo calculations, is between one and two. Trapping may contribute significantly to noise in reaction rates. The statistical distribution of capture times is obtained from Monte Carlo calculations and shows a crossover from power-law to exponential behavior. The distribution is analyzed using probability generating functions; this analysis resolves the contributions of the different sources of randomness to the distribution of capture times. This analysis predicts the distribution function for a lattice with perfect mixing; deviations reflect imperfect mixing in an ordinary random walk.
Saxton
Michael J
MJ
Department of Biochemistry and Molecular Medicine, University of California, Davis, California, USA. mjsaxton@ucdavis.edu
D001692:Biological Transport / Q000502:physiology*; D001704:Biopolymers / Q000737:chemistry* / Q000378:metabolism; D002462:Cell Membrane / Q000737:chemistry* / Q000378:metabolism; D003198:Computer Simulation; D004058:Diffusion; D007700:Kinetics; D008954:Models, Biological; D008956:Models, Chemical; D013347:Subcellular Fractions / Q000737:chemistry* / Q000378:metabolism
D001704:Biopolymers