title: Molecular spiders with memory.
abstract: Synthetic biomolecular spiders with "legs" made of single-stranded segments of DNA can move on a surface which is also covered by single-stranded segments of DNA complementary to the leg DNA. In experimental realizations, when a leg detaches from a segment of the surface for the first time it alters that segment, and legs subsequently bind to these altered segments more weakly. Inspired by these experiments, we investigate spiders moving along a one-dimensional substrate, whose legs leave newly visited sites at a slower rate than revisited sites. For a random walk (one-leg spider), the slowdown does not affect the long time behavior. For a bipedal spider, however, the slowdown generates an effective bias toward unvisited sites, and the spider behaves similarly to the excited walk. Surprisingly, the slowing down of the spider at new sites increases the diffusion coefficient and accelerates the growth of the number of visited sites.
authors.affiliation: Program for Evolutionary Dynamics, Harvard University, Cambridge, Massachusetts 02138, USA.
authors.forename: Tibor
authors.initials: T
authors.lastname: Antal
authors.forename: P L
authors.initials: PL
authors.lastname: Krapivsky
mesh_terms: D000818:Animals; D001703:Biophysics / Q000379:methods*; D003198:Computer Simulation; D018076:DNA, Complementary / Q000378:metabolism; D004277:DNA, Single-Stranded / Q000737:chemistry*; D008390:Markov Chains; D015233:Models, Statistical; D008962:Models, Theoretical; D016011:Normal Distribution; D011336:Probability; D013112:Spiders
chemical_list: D018076:DNA, Complementary; D004277:DNA, Single-Stranded