title: Synthetic efficiency in enzyme mechanisms involving carbocations: aristolochene synthase.
abstract: An intramolecular proton-transfer mechanism has been proposed for the carbocationic cyclization of farnesyl pyrophosphate (FPP) to (+)-aristolochene catalyzed by aristolochene synthase. This novel mechanism, which is based on results obtained by high-level ab initio molecular orbital and density functional theory calculations, differs from the previous proposal in the key step of carbocation propagation prior to the formation of the bicyclic carbon skeleton. Previously, germacrene A was proposed to be generated as an intermediate by deprotonation of germacryl cation followed by reprotonation of the C6-C7 double bond to yield eudesmane cation. In the mechanism proposed here the direct intramolecular proton transfer has a computed barrier of about 22 kcal/mol, which is further lowered to 16-20 kcal/mol by aristolochene synthase. An alternative pathway is also possible through a proton shuttle via a pyrophosphate-bound water molecule. The mechanism proposed here is consistent with the observation that germacrene A is not a substrate of aristolochene synthase. Furthermore, the modeled substrate-enzyme complex suggests that Trp 334 and Phe 178 play key roles in positioning the substrate in the reactive orientation in the binding pocket. This is consistent with experimental findings that mutations of either residue lead to pronounced generation of aborted cyclization products.
authors.affiliation: School of Chemistry, Cardiff University, Park Place, Cardiff, CF10 3AT, U.K. allemannrk@cf.ac.uk
authors.forename: Rudolf K
authors.initials: RK
authors.lastname: Allemann
authors.forename: Neil J
authors.initials: NJ
authors.lastname: Young
authors.forename: Shuhua
authors.initials: S
authors.lastname: Ma
authors.forename: Donald G
authors.initials: DG
authors.lastname: Truhlar
authors.forename: Jiali
authors.initials: J
authors.lastname: Gao
mesh_terms: D002244:Carbon / Q000737:chemistry* / Q000378:metabolism*; D002412:Cations / Q000737:chemistry; D003198:Computer Simulation; D007535:Isomerases / Q000737:chemistry* / Q000378:metabolism*; D008958:Models, Molecular; D015394:Molecular Structure; D010407:Penicillium / Q000201:enzymology; D017434:Protein Structure, Tertiary
chemical_list: D002412:Cations; D002244:Carbon; D007535:Isomerases; C060050:aristolochene synthase