title: Comparison of microsatellite length polymorphism and multilocus sequence typing for DNA-Based typing of Candida albicans.
abstract: For genotyping Candida albicans isolates, two PCR-based methods have recently emerged: multilocus sequence typing (MLST), based on the sequence of selected genes, and microsatellite length polymorphism (MLP), based on the length of PCR products containing variable numbers of short DNA repeats. To compare the two methods in their abilities to differentiate and group C. albicans isolates, we selected 50 independent isolates collected at the National Reference Center for Mycoses and Antifungals. MLST typing was performed using sequencing of seven loci as described at (http://test1.mlst.net). The MLP method consisted of a single multiplex PCR testing three different loci. Dendrograms were constructed by the unweighted pair group cluster method with Euclidean metric for both methods. The correlation between the distance matrices was performed with a Mantel test tested with 1,000 random permutations. The sensitivity and specificity of the MLP typing system were determined after allocating MLST groups for the greater number of isolates of each distinct MLP group. The discriminatory power index was >0.99, and the distances between the isolates were highly correlated with both systems. The Mantel coefficient and the Pearson product-moment correlation coefficient were 35,699 and 0.32, respectively (P < or = 1.2 x 10(-6)). Using MLP, the average specificity and sensitivity of clustering compared to MLST were 83% and 73%, respectively, when the singletons were excluded. The two methods are similarly discriminatory and can be interchangeable depending on the objectives. MLP is less expensive and faster than MLST. However, MLST is currently more accurate and additional standardization is needed for MLP.
authors.affiliation: Centre National de Référence de Mycologie et des Antifongiques, Unité de Mycologie Moléculaire, CNRS URA 3012, Institut Pasteur, Paris, France.
authors.forename: Dea
authors.initials: D
authors.lastname: Garcia-Hermoso
authors.forename: Odile
authors.initials: O
authors.lastname: Cabaret
authors.forename: Gael
authors.initials: G
authors.lastname: Lecellier
authors.forename: Marie
authors.initials: M
authors.lastname: Desnos-Ollivier
authors.forename: Damien
authors.initials: D
authors.lastname: Hoinard
authors.forename: Dorothée
authors.initials: D
authors.lastname: Raoux
authors.forename: Jean-Marc
authors.initials: JM
authors.lastname: Costa
authors.forename: Françoise
authors.initials: F
authors.lastname: Dromer
authors.forename: Stéphane
authors.initials: S
authors.lastname: Bretagne
mesh_terms: D002176:Candida albicans / Q000145:classification* / Q000235:genetics*; D016000:Cluster Analysis; D004271:DNA, Fungal / Q000737:chemistry / Q000235:genetics*; D005838:Genotype; D006801:Humans; D018895:Microsatellite Repeats / Q000235:genetics*; D016533:Mycological Typing Techniques / Q000379:methods*; D012680:Sensitivity and Specificity; D017422:Sequence Analysis, DNA; D013223:Statistics as Topic
chemical_list: D004271:DNA, Fungal