Oryza Tag Line, a phenotypic mutant database for the Genoplante rice insertion line library.
To organize data resulting from the phenotypic characterization of a library of 30,000 T-DNA enhancer trap (ET) insertion lines of rice (Oryza sativa L cv. Nipponbare), we developed the Oryza Tag Line (OTL) database (http://urgi.versailles.inra.fr/OryzaTagLine/). OTL structure facilitates forward genetic search for specific phenotypes, putatively resulting from gene disruption, and/or for GUSA or GFP reporter gene expression patterns, reflecting ET-mediated endogenous gene detection. In the latest version, OTL gathers the detailed morpho-physiological alterations observed during field evaluation and specific screens in a first set of 13,928 lines. Detection of GUS or GFP activity in specific organ/tissues in a subset of the library is also provided. Search in OTL can be achieved through trait ontology category, organ and/or developmental stage, keywords, expression of reporter gene in specific organ/tissue as well as line identification number. OTL now contains the description of 9721 mutant phenotypic traits observed in 2636 lines and 1234 GUS or GFP expression patterns. Each insertion line is documented through a generic passport data including production records, seed stocks and FST information. 8004 and 6101 of the 13,928 lines are characterized by at least one T-DNA and one Tos17 FST, respectively that OTL links to the rice genome browser OryGenesDB.
Larmande
Pierre
P
CIRAD-INRA-SUPAGRO-UMII, UMR 1098 DAP, Biological Systems Department, 2477 Avenue Agropolis, F-34398 Montpellier Cedex 5, France.
Gay
Céline
C
Lorieux
Mathias
M
Périn
Christophe
C
Bouniol
Matthieu
M
Droc
Gaëtan
G
Sallaud
Christophe
C
Perez
Pascual
P
Barnola
Isabelle
I
Biderre-Petit
Corinne
C
Martin
Jérôme
J
Morel
Jean Benoît
JB
Johnson
Alexander A T
AA
Bourgis
Fabienne
F
Ghesquière
Alain
A
Ruiz
Manuel
M
Courtois
Brigitte
B
Guiderdoni
Emmanuel
E
D004269:DNA, Bacterial / Q000235:genetics; D030541:Databases, Genetic; D015723:Gene Library; D017930:Genes, Reporter; D020407:Internet; D016254:Mutagenesis, Insertional; D009154:Mutation; D012275:Oryza / Q000235:genetics*; D010641:Phenotype; D016324:Sequence Tagged Sites; D014584:User-Computer Interface
D004269:DNA, Bacterial; C036483:T-DNA