Determination of synthetic polypeptide conformations and molecular geometrical parameters by nonaqueous CE.
The aim of this work was to study changes in homopolypeptide chain conformation as a function of the number of residues by the modeling of the electrophoretic mobility. For this purpose, the frictional coefficients of poly(N(epsilon)-trifluoroacetyl-L-lysine) with different number of residues (up to 11) were determined from the absolute ionic mobilities and modeled by the hydrodynamic frictional coefficient of an equivalent cylinder. This approach allowed determination of geometrical parameters of the polypeptide chain in a liquid phase (nonaqueous solution of the BGE). The fact that the BGE and analyte are dissolved in mixed (methanol-ACN) organic solvent implied to take into account different effects and corrections that are generally not considered in aqueous solvent: namely, the effect of ion-pairs between constituents of the BGE for the calculation of the ionic strength, the effect of ion-pairs between the solutes and the electrolyte counterions and the correction due to the dielectric friction (Hubbard-Onsager equations). In addition, the influence of the ionic strength on the electrophoretic mobility was corrected using the Pitts equation, and the effect of lateral charges due to a slight deprotonation of the -NH- group in the lateral chain was also considered. From this modeling, molecular geometrical parameters relative to the linear and helicoïdal conformations were obtained with very good correlation coefficients. Interestingly, this work also points out that the use of ionic mobility modeling for extracting molecular geometrical parameters can also be applied to end-charged polypeptides with slightly charged lateral chains (3% of elementary charge per residue).
Plasson
Raphaël
R
Institut des Biomolécules Max Mousseron, UMR 5247 CNRS - Université de Montpellier 1 - Université de Montpellier 2, Montpellier, France.
Vayaboury
Willy
W
Giani
Olivia
O
Cottet
Hervé
H
D000097:Acetonitriles / Q000737:chemistry; D000465:Algorithms; D019075:Electrophoresis, Capillary / Q000379:methods*; D017276:Friction; D057927:Hydrophobic and Hydrophilic Interactions; D000432:Methanol / Q000737:chemistry; D008956:Models, Chemical; D008958:Models, Molecular; D009930:Organic Chemicals / Q000737:chemistry*; D009994:Osmolar Concentration; D010455:Peptides / Q000138:chemical synthesis / Q000737:chemistry*; D011107:Polylysine / Q000138:chemical synthesis / Q000737:chemistry*; D011487:Protein Conformation; D012997:Solvents / Q000737:chemistry*; D014269:Trifluoroacetic Acid / Q000138:chemical synthesis / Q000737:chemistry
D000097:Acetonitriles; D009930:Organic Chemicals; D010455:Peptides; D012997:Solvents; D011107:Polylysine; D014269:Trifluoroacetic Acid; D000432:Methanol