CONSORF: a consensus prediction system for prokaryotic coding sequences.
CONSORF is a fully automatic high-accuracy identification system that provides consensus prokaryotic CDS information. It first predicts the CDSs supported by consensus alignments. The alignments are derived from multiple genome-to-proteome comparisons with other prokaryotes using the FASTX program. Then, it fills the empty genomic regions with the CDSs supported by consensus ab initio predictions. From those consensus results, CONSORF provides prediction reliability scores, predicted frame-shifts, alternative start sites and best pair-wise match information against other prokaryotes. These results are easily accessed from a website.
Kang
Sungsoo
S
KOBIC (Korean BioInformation Center), KRIBB, Daejeon 305-806 and Soongsil University, 1-1 Sangdo-dong, Dongjak-gu, Seoul 156-743, Korea.
Yang
Sung-Jin
SJ
Kim
Sangsoo
S
Bhak
Jong
J
D000465:Algorithms; D001483:Base Sequence; D002874:Chromosome Mapping / Q000379:methods*; D016384:Consensus Sequence / Q000235:genetics*; D016680:Genome, Bacterial / Q000235:genetics*; D008969:Molecular Sequence Data; D016366:Open Reading Frames / Q000235:genetics*; D016415:Sequence Alignment / Q000379:methods*; D017422:Sequence Analysis, DNA / Q000379:methods*; D012984:Software