title: Mining patents using molecular similarity search.
abstract: Text analytics is becoming an increasingly important tool used in biomedical research. While advances continue to be made in the core algorithms for entity identification and relation extraction, a need for practical applications of these technologies arises. We developed a system that allows users to explore the US Patent corpus using molecular information. The core of our system contains three main technologies: A high performing chemical annotator which identifies chemical terms and converts them to structures, a similarity search engine based on the emerging IUPAC International Chemical Identifier (InChI) standard, and a set of on demand data mining tools. By leveraging this technology we were able to rapidly identify and index 3,623,248 unique chemical structures from 4,375,036 US Patents and Patent Applications. Using this system a user may go to a web page, draw a molecule, search for related Intellectual Property (IP) and analyze the results. Our results prove that this is a far more effective way for identifying IP than traditional keyword based approaches.
authors.affiliation: IBM, Almaden Services Research, San Jose, CA 95120, USA. jjrhodes@us.ibm.com
authors.forename: James
authors.initials: J
authors.lastname: Rhodes
authors.forename: Stephen
authors.initials: S
authors.lastname: Boyer
authors.forename: Jeffrey
authors.initials: J
authors.lastname: Kreulen
authors.forename: Ying
authors.initials: Y
authors.lastname: Chen
authors.forename: Patricia
authors.initials: P
authors.lastname: Ordonez
mesh_terms: D000043:Abstracting and Indexing; D000465:Algorithms; D002621:Chemistry / Q000706:statistics & numerical data; D019295:Computational Biology; D015394:Molecular Structure; D010330:Patents as Topic / Q000706:statistics & numerical data; D014481:United States