Update of ASRP: the Arabidopsis Small RNA Project database.
Development of the Arabidopsis Small RNA Project (ASRP) Database, which provides information and tools for the analysis of microRNA, endogenous siRNA and other small RNA-related features, has been driven by the introduction of high-throughput sequencing technology. To accommodate the demands of increased data, numerous improvements and updates have been made to ASRP, including new ways to access data, more efficient algorithms for handling data, and increased integration with community-wide resources. New search and visualization tools have also been developed to improve access to small RNA classes and their targets. ASRP is publicly available through a web interface at http://asrp.cgrb.oregonstate.edu/db/.
Backman
Tyler W H
TW
Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology and Molecular and Cellular Biology Program, Oregon State University, Corvallis, OR 97331, USA.
Sullivan
Christopher M
CM
Cumbie
Jason S
JS
Miller
Zachary A
ZA
Chapman
Elisabeth J
EJ
Fahlgren
Noah
N
Givan
Scott A
SA
Carrington
James C
JC
Kasschau
Kristin D
KD
D017360:Arabidopsis / Q000235:genetics*; D030561:Databases, Nucleic Acid; D020407:Internet; D035683:MicroRNAs / Q000737:chemistry*; D018749:RNA, Plant / Q000737:chemistry*; D034741:RNA, Small Interfering / Q000737:chemistry*; D022661:RNA, Untranslated / Q000737:chemistry; D014584:User-Computer Interface
D035683:MicroRNAs; D018749:RNA, Plant; D034741:RNA, Small Interfering; D022661:RNA, Untranslated