title: Comparison of biochemical and molecular methods for the identification of bacterial isolates associated with failed loggerhead sea turtle eggs.
abstract: OBJECTIVE
  Comparison of biochemical vs molecular methods for identification of microbial populations associated with failed loggerhead turtle eggs.
  
  
  RESULTS
  Two biochemical (API and Microgen) and one molecular methods (16s rRNA analysis) were compared in the areas of cost, identification, corroboration of data with other methods, ease of use, resources and software. The molecular method was costly and identified only 66% of the isolates tested compared with 74% for API. A 74% discrepancy in identifications occurred between API and 16s rRNA analysis. The two biochemical methods were comparable in cost, but Microgen was easier to use and yielded the lowest discrepancy among identifications (29%) when compared with both API 20 enteric (API 20E) and API 20 nonenteric (API 20NE) combined. A comparison of API 20E and API 20NE indicated an 83% discrepancy between the two methods.
  
  
  CONCLUSIONS
  The Microgen identification system appears to be better suited than API or 16s rRNA analysis for identification of environmental isolates associated with failed loggerhead eggs.
  
  
  CONCLUSIONS
  Most identification methods are not intended for use with environmental isolates. A comparison of identification systems would provide better options for identifying environmental bacteria for ecological studies.
authors.affiliation: Department of Biology, Armstrong Atlantic State University, Savannah, GA, USA. Judy.Awong-Taylor@armstrong.edu
authors.forename: J
authors.initials: J
authors.lastname: Awong-Taylor
authors.forename: K S
authors.initials: KS
authors.lastname: Craven
authors.forename: L
authors.initials: L
authors.lastname: Griffiths
authors.forename: C
authors.initials: C
authors.lastname: Bass
authors.forename: M
authors.initials: M
authors.lastname: Muscarella
mesh_terms: D000818:Animals; D015373:Bacterial Typing Techniques / Q000191:economics*; D003365:Costs and Cost Analysis; D004531:Eggs / Q000382:microbiology*; D006090:Gram-Negative Bacteria / Q000235:genetics / Q000302:isolation & purification; D006094:Gram-Positive Bacteria / Q000235:genetics / Q000302:isolation & purification; D012336:RNA, Ribosomal, 16S / Q000032:analysis; D011933:Reagent Kits, Diagnostic; D014426:Turtles / Q000382:microbiology*
chemical_list: D012336:RNA, Ribosomal, 16S; D011933:Reagent Kits, Diagnostic