Exact solution of a RNA-like polymer model on the Husimi lattice.
We investigate a two-tolerant polymer model on the square Husimi lattice, which aims at describing the properties of RNA-like macromolecules. We solve the model in a numerically exact way, working out the grand-canonical phase diagram, both with and without taking into account the stacking effect. Besides a nonpolymerized phase, we observe two different polymerized phases characterized by a lower or higher density of doubly visited lattice bonds. The system exhibits three qualitatively different regimes, as a function of the monomer chemical potential. Below some T1 temperature and above some T2 temperature, the transition to the nonpolymerized phase is continuous, whereas, in the (T1,T2) temperature range, the transition is first order. In the dilute-solution limit, the high temperature regime corresponds to a swollen ("coil") state, the intermediate regime to a moderately collapsed ("molten") state, with a small fraction of paired segments, and the low temperature regime to an almost fully paired ("native") state. The molten state ends in a tricritical (Theta-like) transition at high temperature and in a critical end point at low temperature. Upon increasing the stacking energy parameter, the temperature range of the molten state turns out to be progressively reduced but never completely removed.
Zara
Reginaldo A
RA
Universidade Estadual do Oeste do Paraná, CCET-Cascavel, Paraná PR-85819-110, Brazil.
Pretti
Marco
M
D008962:Models, Theoretical; D009690:Nucleic Acid Conformation; D012313:RNA / Q000737:chemistry*; D013816:Thermodynamics
D012313:RNA