Automatic segmentation of articular cartilage in magnetic resonance images of the knee.
To perform cartilage quantitative analysis requires the accurate segmentation of each individual cartilage. In this paper we present a model based scheme that can automatically and accurately segment each individual cartilage in healthy knees from a clinical MR sequence (fat suppressed spoiled gradient recall). This scheme consists of three stages; the automatic segmentation of the bones, the extraction of the bone-cartilage interfaces (BCI) and segmentation of the cartilages. The bone segmentation is performed using three-dimensional active shape models. The BCI is extracted using image information and prior knowledge about the likelihood of each point belonging to the interface. A cartilage thickness model then provides constraints and regularizes the cartilage segmentation performed from the BCI. The accuracy and robustness of the approach was experimentally validated, with (patellar, tibial and femoral) cartilage segmentations having a median DSC of (0.870, 0.855, 0.870), performing significantly better than non-rigid registration (0.787, 0.814, 0.795). The total cartilage segmentation had an average DSC of (0.891), close to the (0.896) obtained using a semi-automatic watershed algorithm. The error in quantitative volume and thickness measures was (8.29, 4.94, 5.56)% and (0.19, 0.33, 0.10) mm respectively.
Fripp
Jurgen
J
BioMedIA Lab, e-Health Research Centre, CSIRO ICT Centre, Australia. jurgen.fripp@csiro.au
Crozier
Stuart
S
Warfield
Simon K
SK
Ourselin
Sébastien
S
D000465:Algorithms; D001185:Artificial Intelligence; D002358:Cartilage, Articular / Q000033:anatomy & histology*; D006801:Humans; D007089:Image Enhancement / Q000379:methods; D007090:Image Interpretation, Computer-Assisted / Q000379:methods*; D021621:Imaging, Three-Dimensional / Q000379:methods*; D007719:Knee Joint / Q000033:anatomy & histology*; D008279:Magnetic Resonance Imaging / Q000379:methods*; D010363:Pattern Recognition, Automated / Q000379:methods*; D015203:Reproducibility of Results; D012680:Sensitivity and Specificity