RReportGenerator: automatic reports from routine statistical analysis using R.
With the establishment of high-throughput (HT) screening methods there is an increasing need for automatic analysis methods. Here we present RReportGenerator, a user-friendly portal for automatic routine analysis using the statistical platform R and Bioconductor. RReportGenerator is designed to analyze data using predefined analysis scenarios via a graphical user interface (GUI). A report in pdf format combining text, figures and tables is automatically generated and results may be exported. To demonstrate suitable analysis tasks we provide direct web access to a collection of analysis scenarios for summarizing data from transfected cell arrays (TCA), segmentation of CGH data, and microarray quality control and normalization.


BACKGROUND
RReportGenerator, a user manual and a collection of analysis scenarios are available under a GNU public license on http://www-bio3d-igbmc.u-strasbg.fr/~wraff
Raffelsberger
Wolfgang
W
Laboratoire de Bioinformatique et Génomique Intégratives, IGBMC, UMR 7104, 67404 Illkirch, France. wolfgang.raffelsberger@igbmc.u-strasbg.fr
Krause
Yannick
Y
Moulinier
Luc
L
Kieffer
David
D
Morand
Anne-Laure
AL
Brino
Laurent
L
Poch
Olivier
O
D000465:Algorithms; D003196:Computer Graphics; D003627:Data Interpretation, Statistical; D004282:Documentation / Q000379:methods*; D020869:Gene Expression Profiling / Q000379:methods*; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D012984:Software; D014584:User-Computer Interface