Intensive management affects composition of betaproteobacterial ammonia oxidizers in turfgrass systems.
Turfgrass is a highly managed ecosystem subject to frequent fertilization, mowing, irrigation, and application of pesticides. Turf management practices may create a perturbed environment for ammonia oxidizers, a key microbial group responsible for nitrification. To elucidate the long-term effects of turf management on these bacteria, we assessed the composition of betaproteobacterial ammonia oxidizers in a chronosequence of turfgrass systems (i.e., 1, 6, 23, and 95 years old) and the adjacent native pines by using both 16S rRNA and amoA gene fragments specific to ammonia oxidizers. Based on the Shannon-Wiener diversity index of denaturing gradient gel electrophoresis patterns and the rarefaction curves of amoA clones, turf management did not change the relative diversity and richness of ammonia oxidizers in turf soils as compared to native pine soils. Ammonia oxidizers in turfgrass systems comprised a suite of phylogenetic clusters common to other terrestrial ecosystems. Nitrosospira clusters 0, 2, 3, and 4; Nitrosospira sp. Nsp65-like sequences; and Nitrosomonas clusters 6 and 7 were detected in the turfgrass chronosequence with Nitrosospira clusters 3 and 4 being dominant. However, both turf age and land change (pine to turf) effected minor changes in ammonia oxidizer composition. Nitrosospira cluster 0 was observed only in older turfgrass systems (i.e., 23 and 95 years old); fine-scale differences within Nitrosospira cluster 3 were seen between native pines and turf. Further investigations are needed to elucidate the ecological implications of the compositional differences.
Department of Soil Science, North Carolina State University, Campus Box 7619, Raleigh, NC 27695, USA.
Emily A
EA
Dell
Daniel
D
Bowman
Thomas
T
Rufty
Wei
W
Shi
D000641:Ammonia / Q000378:metabolism*; D020562:Betaproteobacteria / Q000145:classification* / Q000235:genetics / Q000254:growth & development; D003001:Cloning, Molecular; D003247:Conservation of Natural Resources; D017753:Ecosystem; D014644:Genetic Variation; D008969:Molecular Sequence Data; D009606:Nitrosomonas / Q000145:classification / Q000235:genetics / Q000254:growth & development; D009657:North Carolina; D010084:Oxidation-Reduction; D010088:Oxidoreductases / Q000235:genetics; D010802:Phylogeny; D006109:Poaceae; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017422:Sequence Analysis, DNA; D012988:Soil Microbiology; D013997:Time Factors
D012336:RNA, Ribosomal, 16S; D000641:Ammonia; D010088:Oxidoreductases; C045582:ammonia monooxygenase