Effect of cationic comb-type copolymer on quadruplex folding of human telomeric DNA.
Cationic comb-type copolymer (CCC) consisting of a polycationic backbone and abundant graft water-soluble chains exhibited considerable stabilization effect on DNA hybrids, such as double- and triple-stranded DNAs. Here, we describe the effect of CCC on antiparallel G-quadruplex folding of human telomeric DNA, d(GGGTTA)(n) in the presence of sodium ions. CCC did not significantly alter the circular dichroism (CD) spectra of d((GGGTTA)(3)GGG) and d((GGGTTA)(7)GGG) indicating that the CCC did not influence the antiparallel folding of the telomeric repeats. Hence, the ionic interaction of CCC with the DNA sequence did not interfere with specific interaction of the DNA with sodium ions to form G-quartets. Interestingly, CCC did not change the melting temperature of the d((GGGTTA)(3)GGG) suggesting negligible stabilizing effect of CCC on the antiparallel quadruplex structure.
Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Yokohama, Japan.
Naoki
N
Makita
Sung Won
SW
Choi
Arihiro
A
Kano
Asako
A
Yamayoshi
Toshihiro
T
Akaike
Atsushi
A
Maruyama
D001483:Base Sequence; D002412:Cations; D002942:Circular Dichroism; D004247:DNA / Q000737:chemistry* / Q000187:drug effects; D003911:Dextrans / Q000737:chemistry / Q000494:pharmacology*; D006801:Humans; D066298:In Vitro Techniques; D009690:Nucleic Acid Conformation / Q000187:drug effects; D009691:Nucleic Acid Denaturation; D011107:Polylysine / Q000031:analogs & derivatives* / Q000737:chemistry / Q000494:pharmacology; D016615:Telomere / Q000737:chemistry* / Q000187:drug effects; D013816:Thermodynamics
D002412:Cations; D003911:Dextrans; C113090:poly(lysine)-graft-dextran; D011107:Polylysine; D004247:DNA