TreeFam: 2008 Update.
TreeFam (http://www.treefam.org) was developed to provide curated phylogenetic trees for all animal gene families, as well as orthologue and paralogue assignments. Release 4.0 of TreeFam contains curated trees for 1314 families and automatically generated trees for another 14,351 families. We have expanded TreeFam to include 25 fully sequenced animal genomes, as well as four genomes from plant and fungal outgroup species. We have also introduced more accurate approaches for automatically grouping genes into families, for building phylogenetic trees, and for inferring orthologues and paralogues. The user interface for viewing phylogenetic trees and family information has been improved. Furthermore, a new perl API lets users easily extract data from the TreeFam mysql database.
Beijing Institute of Genomics of the Chinese Academy of Sciences, Beijing Genomics Institute, Beijing 101300, China.
Jue
J
Ruan
Heng
H
Li
Zhongzhong
Z
Chen
Avril
A
Coghlan
Lachlan James M
LJ
Coin
Yiran
Y
Guo
Jean-Karim
JK
Hériché
Yafeng
Y
Hu
Karsten
K
Kristiansen
Ruiqiang
R
Li
Tao
T
Liu
Alan
A
Moses
Junjie
J
Qin
Søren
S
Vang
Albert J
AJ
Vilella
Abel
A
Ureta-Vidal
Lars
L
Bolund
Jun
J
Wang
Richard
R
Durbin
D000818:Animals; D030541:Databases, Genetic; D023281:Genomics; D020407:Internet; D010802:Phylogeny; D012984:Software; D014584:User-Computer Interface