Novel roles for selected genes in meiotic DNA processing.
High-throughput studies of the 6,200 genes of Saccharomyces cerevisiae have provided valuable data resources. However, these resources require a return to experimental analysis to test predictions. An in-silico screen, mining existing interaction, expression, localization, and phenotype datasets was developed with the aim of selecting minimally characterized genes involved in meiotic DNA processing. Based on our selection procedure, 81 deletion mutants were constructed and tested for phenotypic abnormalities. Eleven (13.6%) genes were identified to have novel roles in meiotic DNA processes including DNA replication, recombination, and chromosome segregation. In particular, this analysis showed that Def1, a protein that facilitates ubiquitination of RNA polymerase II as a response to DNA damage, is required for efficient synapsis between homologues and normal levels of crossover recombination during meiosis. These characteristics are shared by a group of proteins required for Zip1 loading (ZMM proteins). Additionally, Soh1/Med31, a subunit of the RNA pol II mediator complex, Bre5, a ubiquitin protease cofactor and an uncharacterized protein, Rmr1/Ygl250w, are required for normal levels of gene conversion events during meiosis. We show how existing datasets may be used to define gene sets enriched for specific roles and how these can be evaluated by experimental analysis.
Jordan
Philip W
PW
Institute of Cell Biology, University of Edinburgh, Edinburgh, United Kingdom.
Klein
Franz
F
Leach
David R F
DR
D019295:Computational Biology; D003434:Crossing Over, Genetic; D004261:DNA Replication / Q000235:genetics; D004271:DNA, Fungal / Q000235:genetics* / Q000378:metabolism*; D030541:Databases, Genetic; D025141:Drug Resistance, Fungal / Q000235:genetics; D005785:Gene Conversion; D017353:Gene Deletion; D005800:Genes, Fungal; D008540:Meiosis / Q000235:genetics* / Q000502:physiology*; D010641:Phenotype; D011836:Radiation Tolerance / Q000235:genetics; D012441:Saccharomyces cerevisiae / Q000166:cytology / Q000187:drug effects / Q000235:genetics* / Q000378:metabolism* / Q000528:radiation effects
D004271:DNA, Fungal