Remediation of the protein data bank archive.
The Worldwide Protein Data Bank (wwPDB; wwpdb.org) is the international collaboration that manages the deposition, processing and distribution of the PDB archive. The online PDB archive at ftp://ftp.wwpdb.org is the repository for the coordinates and related information for more than 47 000 structures, including proteins, nucleic acids and large macromolecular complexes that have been determined using X-ray crystallography, NMR and electron microscopy techniques. The members of the wwPDB-RCSB PDB (USA), MSD-EBI (Europe), PDBj (Japan) and BMRB (USA)-have remediated this archive to address inconsistencies that have been introduced over the years. The scope and methods used in this project are presented.
Henrick
Kim
K
MSD-EBI, EMBL Outstation-Hinxton, Cambridge CB10 1SD, UK.
Feng
Zukang
Z
Bluhm
Wolfgang F
WF
Dimitropoulos
Dimitris
D
Doreleijers
Jurgen F
JF
Dutta
Shuchismita
S
Flippen-Anderson
Judith L
JL
Ionides
John
J
Kamada
Chisa
C
Krissinel
Eugene
E
Lawson
Catherine L
CL
Markley
John L
JL
Nakamura
Haruki
H
Newman
Richard
R
Shimizu
Yukiko
Y
Swaminathan
Jawahar
J
Velankar
Sameer
S
Ory
Jeramia
J
Ulrich
Eldon L
EL
Vranken
Wim
W
Westbrook
John
J
Yamashita
Reiko
R
Yang
Huanwang
H
Young
Jasmine
J
Yousufuddin
Muhammed
M
Berman
Helen M
HM
D001109:Archives; D018360:Crystallography, X-Ray; D030562:Databases, Protein / Q000592:standards; D004015:Dictionaries, Chemical as Topic; D020407:Internet; D046911:Macromolecular Substances / Q000737:chemistry*; D008854:Microscopy, Electron; D019906:Nuclear Magnetic Resonance, Biomolecular; D009696:Nucleic Acids / Q000737:chemistry; D011506:Proteins / Q000737:chemistry; D015203:Reproducibility of Results; D009626:Terminology as Topic
D046911:Macromolecular Substances; D009696:Nucleic Acids; D011506:Proteins