Gene expression profiles in rainbow trout, Onchorynchus mykiss, exposed to a simple chemical mixture.
Among proposed uses for microarrays in environmental toxiciology is the identification of key contributors to toxicity within a mixture. However, it remains uncertain whether the transcriptomic profiles resulting from exposure to a mixture have patterns of altered gene expression that contain identifiable contributions from each toxicant component. We exposed isogenic rainbow trout Onchorynchus mykiss, to sublethal levels of ethynylestradiol, 2,2,4,4-tetrabromodiphenyl ether, and chromium VI or to a mixture of all three toxicants Fluorescently labeled complementary DNA (cDNA) were generated and hybridized against a commercially available Salmonid array spotted with 16,000 cDNAs. Data were analyzed using analysis of variance (p<0.05) with a Benjamani-Hochberg multiple test correction (Genespring [Agilent] software package) to identify up and downregulated genes. Gene clustering patterns that can be used as "expression signatures" were determined using hierarchical cluster analysis. The gene ontology terms associated with significantly altered genes were also used to identify functional groups that were associated with toxicant exposure. Cross-ontological analytics approach was used to assign functional annotations to genes with "unknown" function. Our analysis indicates that transcriptomic profiles resulting from the mixture exposure resemble those of the individual contaminant exposures, but are not a simple additive list. However, patterns of altered genes representative of each component of the mixture are clearly discernible, and the functional classes of genes altered represent the individual components of the mixture. These findings indicate that the use of microarrays to identify transcriptomic profiles may aid in the identification of key stressors within a chemical mixture, ultimately improving environmental assessment.
Hook
Sharon E
SE
Battelle, Marine Research Operations, West Sequim Bay Road, Sequim, Washington 98382, USA. sharon.hook@pnl.gov
Skillman
Ann D
AD
Gopalan
Banu
B
Small
Jack A
JA
Schultz
Irvin R
IR
D000818:Animals; D001822:Body Burden; D002857:Chromium / Q000633:toxicity; D016000:Cluster Analysis; D004347:Drug Interactions; D004784:Environmental Monitoring / Q000379:methods*; D004997:Ethinyl Estradiol / Q000633:toxicity; D020869:Gene Expression Profiling; D005786:Gene Expression Regulation / Q000187:drug effects*; D055768:Halogenated Diphenyl Ethers; D006842:Hydrocarbons, Brominated / Q000633:toxicity; D008099:Liver / Q000187:drug effects* / Q000378:metabolism; D020411:Oligonucleotide Array Sequence Analysis; D017686:Oncorhynchus mykiss / Q000235:genetics*; D010647:Phenyl Ethers / Q000633:toxicity; D016133:Polymerase Chain Reaction; D015203:Reproducibility of Results; D013997:Time Factors; D014874:Water Pollutants, Chemical / Q000493:pharmacokinetics / Q000633:toxicity*
D055768:Halogenated Diphenyl Ethers; D006842:Hydrocarbons, Brominated; D010647:Phenyl Ethers; D014874:Water Pollutants, Chemical; C511295:2,2',4,4'-tetrabromodiphenyl ether; D002857:Chromium; C074702:chromium hexavalent ion; D004997:Ethinyl Estradiol