title: Expressed sequence tags from the midgut of Epiphyas postvittana (Walker) (Lepidoptera: Tortricidae).
abstract: The midgut is a key tissue in insect science. Physiological roles include digestion and peritrophic membrane function, as well as being an important target for insecticides. We used an expressed sequence tag (EST) approach to identify candidate genes and gene families involved in these processes in the light brown apple moth, Epiphyas postvittana (Walker) (Lepidoptera: Tortricidae). Two cDNA libraries were constructed from dissected midgut of third to fifth instar larvae. Clustering analysis of 6416 expressed sequence tags produced 1178 tentative unique genes comprising 725 tentative contigs and 453 singletons. The sequences show similar codon usage to sequences from other lepidopterans, a Kozak consensus sequence similar to Drosophila and single nucleotide polymorphisms (SNPs) were detected at a frequency of 1.35/kb. The identity of the most common Interpro families correlates well with major known functions of the midgut. Phylogenetic analysis was conducted on representative sequences from selected multigene families. Gene families include a broad range of digestive proteases, lipases and carbohydrases that appear to have degradative capacity against the major food components found in leaves, the diet of these larvae; and carboxylesterases, glutathione-S-transferases and cytochrome P450 monooxygenases, potentially involved in xenobiotic degradation. Two of the larger multigene families, serine proteases and lipases, expressed a high proportion of genes that are likely to be catalytically inactive.
authors: Horticulture and Food Research Institute, Palmerston North, New Zealand.
authors: R M
authors: RM
authors: Simpson
authors: R D
authors: RD
authors: Newcomb
authors: H S
authors: HS
authors: Gatehouse
authors: R N
authors: RN
authors: Crowhurst
authors: D
authors: D
authors: Chagné
authors: L N
authors: LN
authors: Gatehouse
authors: N P
authors: NP
authors: Markwick
authors: L L
authors: LL
authors: Beuning
authors: C
authors: C
authors: Murray
authors: S D
authors: SD
authors: Marshall
authors: Y-K
authors: YK
authors: Yauk
authors: B
authors: B
authors: Nain
authors: Y-Y
authors: YY
authors: Wang
authors: A P
authors: AP
authors: Gleave
authors: J T
authors: JT
authors: Christeller
mesh_terms: D000626:Aminopeptidases / Q000235:genetics; D000818:Animals; D001483:Base Sequence; D002268:Carboxypeptidases / Q000235:genetics; D018076:DNA, Complementary / Q000235:genetics; D004064:Digestive System / Q000378:metabolism; D020224:Expressed Sequence Tags; D015723:Gene Library; D017344:Genes, Insect; D019476:Insect Proteins / Q000235:genetics; D007915:Lepidoptera / Q000235:genetics*; D050356:Lipid Metabolism; D018598:Minisatellite Repeats; D005810:Multigene Family; D010802:Phylogeny; D012697:Serine Endopeptidases / Q000235:genetics
chemical_list: D018076:DNA, Complementary; D019476:Insect Proteins; D002268:Carboxypeptidases; D000626:Aminopeptidases; D012697:Serine Endopeptidases