title: Characterization of the Drosophila segment determination morphome.
abstract: Here we characterize the expression of the full system of genes which control the segmentation morphogenetic field of Drosophila at the protein level in one dimension. The data used for this characterization are quantitative with cellular resolution in space and about 6 min in time. We present the full quantitative profiles of all 14 segmentation genes which act before the onset of gastrulation. The expression patterns of these genes are first characterized in terms of their average or typical behavior. At this level, the expression of all of the genes has been integrated into a single atlas of gene expression in which the expression levels of all genes in each cell are specified. We show that expression domains do not arise synchronously, but rather each domain has its own specific dynamics of formation. Moreover, we show that the expression domains shift position in the direction of the cephalic furrow, such that domains in the anlage of the segmented germ band shift anteriorly while those in the presumptive head shift posteriorly. The expression atlas of integrated data is very close to the expression profiles of individual embryos during the latter part of the blastoderm stage. At earlier times gap gene domains show considerable variation in amplitude, and significant positional variability. Nevertheless, an average early gap domain is close to that of a median individual. In contrast, we show that there is a diversity of developmental trajectories among pair-rule genes at a variety of levels, including the order of domain formation and positional accuracy. We further show that this variation is dynamically reduced, or canalized, over time. As the first quantitatively characterized morphogenetic field, this system and its behavior constitute an extraordinarily rich set of materials for the study of canalization and embryonic regulation at the molecular level.
authors: Department of Computational Biology, Center for Advanced Studies, St. Petersburg State Polytechnical University, 29 Polytehnicheskaya Street, St. Petersburg, 195251, Russia.
authors: Svetlana
authors: S
authors: Surkova
authors: David
authors: D
authors: Kosman
authors: Konstantin
authors: K
authors: Kozlov
authors: Manu
authors: Ekaterina
authors: E
authors: Myasnikova
authors: Anastasia A
authors: AA
authors: Samsonova
authors: Alexander
authors: A
authors: Spirov
authors: Carlos E
authors: CE
authors: Vanario-Alonso
authors: Maria
authors: M
authors: Samsonova
authors: John
authors: J
authors: Reinitz
mesh_terms: D000704:Analysis of Variance; D000818:Animals; D001756:Blastoderm / Q000166:cytology / Q000378:metabolism; D019521:Body Patterning / Q000235:genetics; D004330:Drosophila / Q000196:embryology* / Q000235:genetics / Q000378:metabolism; D029721:Drosophila Proteins / Q000378:metabolism; D047108:Embryonic Development; D015870:Gene Expression; D020869:Gene Expression Profiling; D018507:Gene Expression Regulation, Developmental; D017344:Genes, Insect; D018398:Homeodomain Proteins / Q000378:metabolism; D009024:Morphogenesis; D015203:Reproducibility of Results; D013997:Time Factors; D014157:Transcription Factors / Q000378:metabolism
chemical_list: D029721:Drosophila Proteins; D018398:Homeodomain Proteins; D014157:Transcription Factors; C052837:eve protein, Drosophila