title: HIV-1 VprB and C RNA cleavage by potent 10-23 DNAzymes that also cause reversal of G2 cell cycle arrest mediated by Vpr genes.
abstract: Accessory Vpr protein of HIV-1 is known to influence several key cellular functions that also impacts on the HIV-1 replication cycle. Besides other activities, it alone causes cell cycle arrest at the G2 phase and thus potentially contribute to the overall pathology. We designed several 10-23 catalytic motifs containing DNAzymes (Dzs) against the full-length Vpr gene from subtype B and checked its activity against VprC gene from one of the Indian HIV-1 isolates. Among several Dzs that showed sequence-specific cleavage activities, Dz-94 was very potent and equally efficient in its ability to cleave full-length VprB and C RNA to completion under standard conditions of cleavage. Although Dz-90 target sequence was fully conserved between VprB and C genes, it was more effective on latter genes, suggesting that spatial structures of RNA at other regions of Vpr can also influence the cleavage activity for this Dz. HIV-1 VprB and C encoding genes under the powerful CMV promoter, when cotransfected into mammalian cells with Dz-94, a potent intracellular inhibition, was observed, which also resulted in reversing the G2 cell cycle arrest mediated by VprB and C proteins. Thus, Dz-94 could potentially be developed to prevent Vpr-mediated cytopathic effects caused by HIV-1 subtype B and C isolates.
authors: National Institute of Immunology, New Delhi-110067, India.
authors: Aalia S
authors: AS
authors: Bano
authors: Nidhi
authors: N
authors: Gupta
authors: Yogeshwar
authors: Y
authors: Sharma
authors: Vikas
authors: V
authors: Sood
authors: Akhil C
authors: AC
authors: Banerjea
mesh_terms: D001483:Base Sequence; D002460:Cell Line; D021881:DNA, Catalytic / Q000378:metabolism*; D016195:G2 Phase; D016336:Gene Products, vpr / Q000378:metabolism*; D016334:Genes, vpr; D015497:HIV-1 / Q000235:genetics* / Q000502:physiology; D006367:HeLa Cells; D006801:Humans; D008969:Molecular Sequence Data; D012367:RNA, Viral / Q000235:genetics / Q000378:metabolism*; D020133:Reverse Transcriptase Polymerase Chain Reaction
chemical_list: D021881:DNA, Catalytic; D016336:Gene Products, vpr; D012367:RNA, Viral