title: The Rice Annotation Project Database (RAP-DB): 2008 update.
abstract: The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated annotation of the sequence, and other genomics information that could be useful for comprehensive understanding of the rice biology. Since the last publication of the RAP-DB, the IRGSP genome has been revised and reassembled. In addition, a large number of rice-expressed sequence tags have been released, and functional genomics resources have been produced worldwide. Thus, we have thoroughly updated our genome annotation by manual curation of all the functional descriptions of rice genes. The latest version of the RAP-DB contains a variety of annotation data as follows: clone positions, structures and functions of 31 439 genes validated by cDNAs, RNA genes detected by massively parallel signature sequencing (MPSS) technology and sequence similarity, flanking sequences of mutant lines, transposable elements, etc. Other annotation data such as Gnomon can be displayed along with those of RAP for comparison. We have also developed a new keyword search system to allow the user to access useful information. The RAP-DB is available at: http://rapdb.dna.affrc.go.jp/ and http://rapdb.lab.nig.ac.jp/.
authors: National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan.
authors: Tsuyoshi
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authors: Tanaka
authors: Baltazar A
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authors: Antonio
authors: Shoshi
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authors: Kikuchi
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authors: Matsumoto
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authors: Nagamura
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authors: Numa
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authors: Sakai
authors: Jianzhong
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authors: Wu
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authors: Itoh
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authors: Sasaki
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authors: Aono
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authors: Fujii
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authors: Habara
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authors: Harada
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authors: Kanno
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authors: Kawahara
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authors: Kawashima
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authors: Kubooka
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authors: Matsuya
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authors: Nakaoka
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authors: Sanbonmatsu
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authors: Todokoro
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authors: Yamaguchi
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authors: Yamamoto
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authors: Imanishi
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authors: Okido
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authors: Apweiler
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authors: Singh
authors: Akhilesh K
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authors: Tyagi
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authors: Masaki
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authors: Fujisawa
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authors: Ito
authors: Hiroshi
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authors: Ikawa
authors: Michie
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authors: Shibata
authors: Mayu
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authors: Yamamoto
authors: Richard M
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authors: Bruskiewich
authors: Douglas R
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authors: Hoen
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authors: Bureau
authors: Nobukazu
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authors: Namiki
authors: Hajime
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authors: Ohyanagi
authors: Yasumichi
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authors: Sakai
authors: Satoshi
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authors: Nobushima
authors: Katsumi
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authors: Sakata
authors: Roberto A
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authors: Barrero
authors: Yutaka
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authors: Sato
authors: Alexandre
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authors: Souvorov
authors: Brian
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authors: Smith-White
authors: Tatiana
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authors: Tatusova
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authors: Gynheung
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authors: Satoshi
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authors: OOta
authors: Galina
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authors: Fuks
authors: Galina
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authors: Fuks
authors: Joachim
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authors: Messing
authors: Karen R
authors: KR
authors: Christie
authors: Damien
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authors: Lieberherr
authors: HyeRan
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authors: Kim
authors: Andrea
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authors: Zuccolo
authors: Rod A
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authors: Wing
authors: Kan
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authors: Nobuta
authors: Pamela J
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authors: Green
authors: Cheng
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authors: Lu
authors: Blake C
authors: BC
authors: Meyers
authors: Cristian
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authors: Chaparro
authors: Benoit
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authors: Piegu
authors: Olivier
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authors: Panaud
authors: Manuel
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authors: Echeverria
mesh_terms: D030561:Databases, Nucleic Acid; D017343:Genes, Plant; D018745:Genome, Plant; D023281:Genomics; D020407:Internet; D035683:MicroRNAs / Q000235:genetics; D012275:Oryza / Q000235:genetics*; D034741:RNA, Small Interfering / Q000235:genetics; D014584:User-Computer Interface
chemical_list: D035683:MicroRNAs; D034741:RNA, Small Interfering