title: Characterization of a modular, cell-surface protein and identification of a new gene family in the diatom Thalassiosira pseudonana.
abstract: We report the characterization of a cell-surface protein isolated from copper-stressed cells of the centric diatom Thalassiosira pseudonana Hasle and Heimdal (CCMP 1335). This protein has an apparent molecular weight of 100kDa and is highly acidic. The 100kDa protein (p100) sequence is comprised almost entirely of a novel domain termed TpRCR for T. pseudonana repetitive cysteine-rich domain, that is repeated 8 times and that contains conserved aromatic, acidic, and potential metal-binding amino acids. The analysis of the T. pseudonana genome suggests that p100 belongs to a large family of modular proteins that consist of a variable number of TpRCR domain repeats. Based on cell surface biotinylation and antibody data, p100 appears to migrate more rapidly with SDS-PAGE when extracted from cells exposed to high levels of copper; however, the discovery of a large family of TpRCR domain-containing proteins leaves open the possibility that the antibody may be cross-reacting with members of this protein family that are responding differently to copper. The response of the gene encoding p100 at the mRNA level during synchronized progression through the normal cell cycle is similar to previously characterized genes in T. pseudonana encoding cell wall proteins called silaffins.
authors.affiliation: Scripps Institution of Oceanography, University of California-San Diego, La Jolla, CA 92093-0202, USA.
authors.forename: Aubrey K
authors.initials: AK
authors.lastname: Davis
authors.forename: Brian
authors.initials: B
authors.lastname: Palenik
mesh_terms: D020418:Algal Proteins / Q000737:chemistry* / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism; D000595:Amino Acid Sequence; D003001:Cloning, Molecular; D017124:Conserved Sequence; D003300:Copper; D048028:DNA, Algal / Q000737:chemistry / Q000235:genetics / Q000302:isolation & purification; D017377:Diatoms / Q000235:genetics* / Q000254:growth & development; D016678:Genome; D008565:Membrane Proteins / Q000737:chemistry* / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism; D008969:Molecular Sequence Data; D005810:Multigene Family; D016133:Polymerase Chain Reaction; D017434:Protein Structure, Tertiary; D016415:Sequence Alignment; D017386:Sequence Homology, Amino Acid
chemical_list: D020418:Algal Proteins; D048028:DNA, Algal; D008565:Membrane Proteins; D003300:Copper