title: HIV type 1 genetic variability in central Brazil.
abstract: This study analyzed the genes pol and env to determine the genetic variability of HIV-1 in Central Brazil. Forty-one isolates of HIV-1-infected individuals had protease, reverse transcriptase, and C2C3/ env amplified by nested PCR and sequenced. The subtype was determined by the program REGA and phylogenetic analyses. The samples identified as putative recombinant forms were analyzed by SimPlot. A high prevalence of subtype B (95.1%) was observed, followed by mosaic viruses B/F (4.9%). The amino acid sequences from 30 HIV-1 isolates were analyzed for the antigenic intrasubtype diversity. The most prevalent gp120 V3 loop motif was the GPGR (United States/Europe) (43.3%), described in B and F subtypes, followed by the GPGK tetrapeptide (10%). The Brazilian variant B" (GWGR), GFGR, and GLGR tetrapeptides were found in 6.7%. Other V3 variants were found in eight isolates (26.7%). Phylogenetic tree analysis was also performed in order to verify the relationship of the HIV-1 samples from Central Brazil with other HIV-1 sequences that circulate in Brazil. The subtype B sequences from Central Brazil formed a polyphyletic cluster in the tree, indicating that these strains are similar to those from other geographic regions. These results contribute to the understanding of HIV in Brazil, and may prove useful for the development of vaccine candidates.
authors.affiliation: Pós-Graduação em Biologia Molecular, Instituto de Biologia, Universidade de Brasília ICC Sul, 70919-900 Brasília, DF, Brazil. nazle_veras@hotmail.com
authors.forename: Nazle M C
authors.initials: NM
authors.lastname: Véras
authors.forename: Verônica S
authors.initials: VS
authors.lastname: Véras
authors.forename: Eduardo D
authors.initials: ED
authors.lastname: Ramalho
authors.forename: Cynthia
authors.initials: C
authors.lastname: Kyaw
authors.forename: Ruiter R
authors.initials: RR
authors.lastname: Silva
authors.forename: Marcelo M
authors.initials: MM
authors.lastname: Brígido
authors.forename: Cláudia R F
authors.initials: CR
authors.lastname: Martins
mesh_terms: D000595:Amino Acid Sequence; D001938:Brazil / Q000453:epidemiology; D015752:Genes, env; D015751:Genes, pol; D014644:Genetic Variation; D015658:HIV Infections / Q000453:epidemiology / Q000821:virology*; D015497:HIV-1 / Q000235:genetics*; D006801:Humans; D008969:Molecular Sequence Data; D010802:Phylogeny; D011995:Recombination, Genetic