title: Quantifying weak hydrogen bonding in uracil and 4-cyano-4'-ethynylbiphenyl: a combined computational and experimental investigation of NMR chemical shifts in the solid state.
abstract: Weak hydrogen bonding in uracil and 4-cyano-4'-ethynylbiphenyl, for which single-crystal diffraction structures reveal close CH...O=C and C[triple bond]CH...N[triple bond]C distances, is investigated in a study that combines the experimental determination of 1H, 13C, and 15N chemical shifts by magic-angle spinning (MAS) solid-state NMR with first-principles calculations using plane-wave basis sets. An optimized synthetic route, including the isolation and characterization of intermediates, to 4-cyano-4'-ethynylbiphenyl at natural abundance and with 13C[triple bond]13CH and 15N[triple bond]C labeling is described. The difference in chemical shifts calculated, on the one hand, for the full crystal structure and, on the other hand, for an isolated molecule depends on both intermolecular hydrogen bonding interactions and aromatic ring current effects. In this study, the two effects are separated computationally by, first, determining the difference in chemical shift between that calculated for a plane (uracil) or an isolated chain (4-cyano-4'-ethynylbiphenyl) and that calculated for an isolated molecule and by, second, calculating intraplane or intrachain nucleus-independent chemical shifts that quantify the ring current effects caused by neighboring molecules. For uracil, isolated molecule to plane changes in the 1H chemical shift of 2.0 and 2.2 ppm are determined for the CH protons involved in CH...O weak hydrogen bonding; this compares to changes of 5.1 and 5.4 ppm for the NH protons involved in conventional NH...O hydrogen bonding. A comparison of CH bond lengths for geometrically relaxed uracil molecules in the crystal structure and for geometrically relaxed isolated molecules reveals differences of no more than 0.002 A, which corresponds to changes in the calculated 1H chemical shifts of at most 0.1 ppm. For the C[triple bond]CH...N[triple bond]C weak hydrogen bonds in 4-cyano-4'-ethynylbiphenyl, the calculated molecule to chain changes are of similar magnitude but opposite sign for the donor 13C and acceptor 15N nuclei. In uracil and 4-cyano-4'-ethynylbiphenyl, the CH hydrogen-bonding donors are sp2 and sp hybridized, respectively; a comparison of the calculated changes in 1H chemical shift with those for the sp3 hybridized CH donors in maltose (Yates et al. J. Am. Chem. Soc. 2005, 127, 10216) reveals no marked dependence on hybridization for weak hydrogen-bonding strength.
authors.affiliation: School of Physics and Astronomy, University of St Andrews, North Haugh, St Andrews KY16 9SS, UK.
authors.forename: Anne-Christine
authors.initials: AC
authors.lastname: Uldry
authors.forename: John M
authors.initials: JM
authors.lastname: Griffin
authors.forename: Jonathan R
authors.initials: JR
authors.lastname: Yates
authors.forename: Marta
authors.initials: M
authors.lastname: Pérez-Torralba
authors.forename: M Dolores Santa
authors.initials: MD
authors.lastname: María
authors.forename: Amy L
authors.initials: AL
authors.lastname: Webber
authors.forename: Maximus L L
authors.initials: ML
authors.lastname: Beaumont
authors.forename: Ago
authors.initials: A
authors.lastname: Samoson
authors.forename: Rosa María
authors.initials: RM
authors.lastname: Claramunt
authors.forename: Chris J
authors.initials: CJ
authors.lastname: Pickard
authors.forename: Steven P
authors.initials: SP
authors.lastname: Brown
mesh_terms: D001713:Biphenyl Compounds / Q000737:chemistry*; D018360:Crystallography, X-Ray; D006860:Hydrogen Bonding; D009682:Magnetic Resonance Spectroscopy; D008432:Mathematical Computing; D009570:Nitriles / Q000737:chemistry*; D014498:Uracil / Q000737:chemistry*
chemical_list: C526608:4-cyano-4'-ethynylbiphenyl; D001713:Biphenyl Compounds; D009570:Nitriles; D014498:Uracil