title: Fine-mapping of a marbling trait to a 2.9-cM region on bovine chromosome 7 in Japanese Black cattle.
abstract: To locate quantitative trait loci (QTL) for intramuscular fat deposition (marbling) in a local population of Japanese Black cattle, we performed a genome scan using a paternal half-sib family of Bull A. A marbling QTL was mapped in the region flanked by DIK0079 (20.7 cM) and TGLA303 (39.3 cM) on bovine chromosome (BTA) 7, affecting 5.0% of the total family variance. Haplotype analysis of the QTL region revealed that the marbling-increasing Q allele was transmitted from the dam. On the other hand, Bull B, a maternal half-sib of Bull A, did not receive the Q allele from its dam, based on the following findings: (i) a marbling QTL on BTA7 was not detected in the Bull B paternal half-sib family; (ii) recombination between DIK0079 (20.7 cM) and RM006 (25.4 cM) in the QTL region was observed in the maternal chromosome of Bull B; and (iii) the Q-harbouring steers from Bull A exhibited significantly higher marbling than the steers from Bull B and the remaining steers from Bull A. To precisely compare the maternal chromosomes of both bulls, we constructed a bacterial artificial chromosome contig covering the region between DIK0079 and RM006 and developed DNA markers. The recombination occurred between DIK8042 and DIK8044, indicating that the marbling QTL was in a 2.9-cM region flanked by DIK0079 and DIK8044.
authors.affiliation: Shirakawa Institute of Animal Genetics, Odakura, Nishigo, Fukushima 961-8061, Japan. takashih@siag.or.jp
authors.forename: T
authors.initials: T
authors.lastname: Hirano
authors.forename: T
authors.initials: T
authors.lastname: Watanabe
authors.forename: K
authors.initials: K
authors.lastname: Inoue
authors.forename: Y
authors.initials: Y
authors.lastname: Sugimoto
mesh_terms: D000273:Adipose Tissue / Q000033:anatomy & histology*; D000483:Alleles; D000818:Animals; D001947:Breeding; D002417:Cattle / Q000033:anatomy & histology* / Q000145:classification / Q000235:genetics*; D022202:Chromosomes, Artificial, Bacterial / Q000235:genetics; D005260:Female; D006239:Haplotypes; D007564:Japan; D008297:Male; D008460:Meat; D018895:Microsatellite Repeats; D018482:Muscle, Skeletal / Q000033:anatomy & histology; D010641:Phenotype; D040641:Quantitative Trait Loci; D013045:Species Specificity