Solvation effect on conformations of 1,2:dimethoxyethane: charge-dependent nonlinear response in implicit solvent models.
The physical content of and, in particular, the nonlinear contributions from the Langevin-Debye model are illustrated using two applications. First, we provide an improvement in the Langevin-Debye model currently used in some implicit solvent models for computer simulations of solvation free energies of small organic molecules, as well as of biomolecular folding and binding. The analysis is based on the implementation of a charge-dependent Langevin-Debye (qLD) model that is modified by subsequent corrections due to Onsager and Kirkwood. Second, the physical content of the model is elucidated by discussing the general treatment within the LD model of the self-energy of a charge submerged in a dielectric medium for three different limiting conditions and by considering the nonlinear response of the medium. The modified qLD model is used to refine an implicit solvent model (previously applied to protein dynamics). The predictions of the modified implicit solvent model are compared with those from explicit solvent molecular dynamics simulations for the equilibrium conformational populations of 1,2-dimethoxyethane (DME), which is the shortest ether molecule to reproduce the local conformational properties of polyethylene oxide, a polymer with tremendous technological importance and a wide variety of applications. Because the conformational population preferences of DME change dramatically upon solvation, DME is a good test case to validate our modified qLD model. The present analysis of the modified qLD model provides the motivation and tools for studying a wide variety of other interesting systems with heterogeneous dielectric properties and spatial anisotropy.
Jha
Abhishek K
AK
Department of Chemistry and The James Franck Institute, The University of Chicago, Chicago, Illinois 60637, USA. ajha@uchicago.edu
Freed
Karl F
KF
D016880:Anisotropy; D002627:Chemistry, Physical / Q000379:methods*; D004867:Equipment Design; D004986:Ether / Q000737:chemistry; D005019:Ethyl Ethers / Q000737:chemistry*; D007477:Ions; D008962:Models, Theoretical; D008968:Molecular Conformation; D015394:Molecular Structure; D017711:Nonlinear Dynamics; D011108:Polymers / Q000737:chemistry; D012997:Solvents; D013816:Thermodynamics
D005019:Ethyl Ethers; D007477:Ions; D011108:Polymers; D012997:Solvents; D004986:Ether; C024683:1,2-dimethoxyethane