title: Evaluation of different polymerase chain reaction methods for the identification of Vibrio parahaemolyticus strains isolated by cultural methods.
abstract: Control of contamination by Vibrio parahaemolyticus in fishery products is often hampered by the lack of standardized methods and by the uncertainty associated with biochemical identification of the isolates. In this study, 5 polymerase chain reaction (PCR) methods for the identification of V. parahaemolyticus to the species level were evaluated by using 25 Vibrio reference strains and 163 isolates from fishery products, environmental sources, and clinical samples. Sequence targets of the methods were toxR, gyrB, and tlh genes (tested with 2 protocols), and the fragment pR72H. Isolate identification was confirmed by sequencing of the 16S rRNA gene and by PCR protocols for the identification of other Vibrio species. The PCR assay targeting the toxR gene achieved the highest performance (100% inclusivity and exclusivity). The 2 PCR protocols based on tlh gene detection, although showing the same inclusivity (100%), differed in the exclusivity (50 and 91%, respectively). Finally, the results provided by the PCR assays targeting the gyrB gene and pR72H fragment were less reliable and, in some cases, difficult to assess. According to the results of this study, the characteristics of accuracy expressed by the toxR identification method make it a suitable candidate as a reference method for the molecular identification of V. parahaemolyticus strains.
authors.affiliation: Istituto Superiore di Sanità, Centro Nazionale per la Qualità degli Alimenti e per i Rischi Alimentari, Reparto Adempimenti Comunitari e Sanità Pubblica, Viale Regina Elena 299, 00161 Rome, Italy. luciana.croci@iss.it
authors.forename: Luciana
authors.initials: L
authors.lastname: Croci
authors.forename: Elisabetta
authors.initials: E
authors.lastname: Suffredini
authors.forename: Loredana
authors.initials: L
authors.lastname: Cozzi
authors.forename: Mara
authors.initials: M
authors.lastname: Paniconi
authors.forename: Gianni
authors.initials: G
authors.lastname: Ciccaglioni
authors.forename: Mauro M
authors.initials: MM
authors.lastname: Colombo
mesh_terms: D001427:Bacterial Toxins / Q000737:chemistry / Q000235:genetics; D001483:Base Sequence; D003470:Culture Media; D004269:DNA, Bacterial / Q000737:chemistry / Q000235:genetics; D004591:Electrophoresis, Polyacrylamide Gel; D005396:Fish Products / Q000382:microbiology; D005398:Fisheries; D008969:Molecular Sequence Data; D012015:Reference Standards; D020133:Reverse Transcriptase Polymerase Chain Reaction; D014736:Vibrio parahaemolyticus / Q000737:chemistry* / Q000235:genetics
chemical_list: D001427:Bacterial Toxins; D003470:Culture Media; D004269:DNA, Bacterial