A biomedically enriched collection of 7000 human ORF clones.
We report the production and availability of over 7000 fully sequence verified plasmid ORF clones representing over 3400 unique human genes. These ORF clones were derived using the human MGC collection as template and were produced in two formats: with and without stop codons. Thus, this collection supports the production of either native protein or proteins with fusion tags added to either or both ends. The template clones used to generate this collection were enriched in three ways. First, gene redundancy was removed. Second, clones were selected to represent the best available GenBank reference sequence. Finally, a literature-based software tool was used to evaluate the list of target genes to ensure that it broadly reflected biomedical research interests. The target gene list was compared with 4000 human diseases and over 8500 biological and chemical MeSH classes in approximately 15 Million publications recorded in PubMed at the time of analysis. The outcome of this analysis revealed that relative to the genome and the MGC collection, this collection is enriched for the presence of genes with published associations with a wide range of diseases and biomedical terms without displaying a particular bias towards any single disease or concept. Thus, this collection is likely to be a powerful resource for researchers who wish to study protein function in a set of genes with documented biomedical significance.
Rolfs
Andreas
A
Harvard Institute of Proteomics, Harvard Medical School, Cambridge, Massachusetts, USA.
Hu
Yanhui
Y
Ebert
Lars
L
Hoffmann
Dietmar
D
Zuo
Dongmei
D
Ramachandran
Niro
N
Raphael
Jacob
J
Kelley
Fontina
F
McCarron
Seamus
S
Jepson
Daniel A
DA
Shen
Binghua
B
Baqui
Munira M A
MM
Pearlberg
Joseph
J
Taycher
Elena
E
DeLoughery
Craig
C
Hoerlein
Andreas
A
Korn
Bernhard
B
LaBaer
Joshua
J
D003001:Cloning, Molecular; D020022:Genetic Predisposition to Disease; D006801:Humans; D016366:Open Reading Frames; D017422:Sequence Analysis, DNA