The relaxing ori-ter balance of Mycoplasma genomes.
Mycoplasma are wall-less bacteria with small genomes, which are thought to have resulted from massive genome reductive processes, during which the ori-ter balance may be disrupted. For technical difficulties, ori and ter have been located only in a few Mycoplasma strains. Using the Z curve method, we were able to locate turning points on the Mycoplasma genomes, with the minimum and maximum points co-locating with ori or ter in the reference genomes. Assuming Z curve correctly located ori and ter, we calculated the distances from ori to ter in both directions on the circular genome and calculated the ori-ter balance status. The Mycoplasma genomes were not balanced, possibly as a result of close association of Mycoplasma with hosts, where there would be no other microbes for Mycoplasma to compete with for nutrients, so fastest possible growth related to balanced genomes might not be needed by Mycoplasma, leading to a relaxing ori-ter balance.
Zheng
Xin
X
Department of Microbiology, Peking University Health Science Center, Beijing 100083, China.
Liu
ShuLin
S
D004261:DNA Replication / Q000502:physiology*; D004269:DNA, Bacterial / Q000032:analysis; D004270:DNA, Circular / Q000032:analysis; D019143:Evolution, Molecular; D016680:Genome, Bacterial / Q000502:physiology*; D009174:Mycoplasma / Q000235:genetics / Q000502:physiology*; D018741:Replication Origin / Q000502:physiology*; D013728:Terminator Regions, Genetic / Q000502:physiology*
D004269:DNA, Bacterial; D004270:DNA, Circular