Bifunctional NMN adenylyltransferase/ADP-ribose pyrophosphatase: structure and function in bacterial NAD metabolism.
Bacterial NadM-Nudix is a bifunctional enzyme containing a nicotinamide mononucleotide (NMN) adenylyltransferase and an ADP-ribose (ADPR) pyrophosphatase domain. While most members of this enzyme family, such as that from a model cyanobacterium Synechocystis sp., are involved primarily in nicotinamide adenine dinucleotide (NAD) salvage/recycling pathways, its close homolog in a category-A biodefense pathogen, Francisella tularensis, likely plays a central role in a recently discovered novel pathway of NAD de novo synthesis. The crystal structures of NadM-Nudix from both species, including their complexes with various ligands and catalytic metal ions, revealed detailed configurations of the substrate binding and catalytic sites in both domains. The structure of the N-terminal NadM domain may be exploited for designing new antitularemia therapeutics. The ADPR binding site in the C-terminal Nudix domain is substantially different from that of Escherichia coli ADPR pyrophosphatase, and is more similar to human NUDT9. The latter observation provided new insights into the ligand binding mode of ADPR-gated Ca2+ channel TRPM2.
Huang
Nian
N
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Sorci
Leonardo
L
Zhang
Xuejun
X
Brautigam
Chad A
CA
Li
Xiaoqing
X
Raffaelli
Nadia
N
Magni
Giulio
G
Grishin
Nick V
NV
Osterman
Andrei L
AL
Zhang
Hong
H
D000246:Adenosine Diphosphate Ribose / Q000737:chemistry; D000249:Adenosine Monophosphate / Q000737:chemistry; D000595:Amino Acid Sequence; D001665:Binding Sites; D002384:Catalysis; D018360:Crystallography, X-Ray; D005604:Francisella tularensis / Q000201:enzymology*; D007700:Kinetics; D008345:Manganese / Q000737:chemistry; D008958:Models, Molecular; D008969:Molecular Sequence Data; D009243:NAD / Q000378:metabolism*; D009612:Nicotinamide-Nucleotide Adenylyltransferase / Q000737:chemistry* / Q000378:metabolism; D017434:Protein Structure, Tertiary; D011755:Pyrophosphatases / Q000737:chemistry* / Q000378:metabolism; D046939:Synechocystis / Q000201:enzymology*
D009243:NAD; D000246:Adenosine Diphosphate Ribose; D000249:Adenosine Monophosphate; D008345:Manganese; D009612:Nicotinamide-Nucleotide Adenylyltransferase; D011755:Pyrophosphatases; C019620:ADPribose pyrophosphatase