A new method of comparing 2D-PAGE maps based on the computation of Zernike moments and multivariate statistical tools.
The aim of this work was to obtain the correct classification of a set of two-dimensional polyacrylamide gel electrophoresis map images using the Zernike moments as discriminant variables. For each 2D-PAGE image, the Zernike moments were computed up to a maximum p order of 100. Partial least squares discriminant analysis with variable selection, based on a backward elimination algorithm, was applied to the moments calculated in order to select those that provided the lowest error in cross-validation. The new method was tested on four datasets: (1) samples belonging to neuroblastoma; (2) samples of human lymphoma; (3) samples from pancreatic cancer cells (two cell lines of control and drug-treated cancer cells); (4) samples from colon cancer cells (total lysates and nuclei treated or untreated with a histone deacetylase inhibitor). The results demonstrate that the Zernike moments can be successfully applied for fast classification purposes. The final aim is to build models that can be used to achieve rapid diagnosis of these illnesses.
Marengo
Emilio
E
Department of Environmental and Life Sciences, University of Eastern Piedmont, Via Bellini 25/G, 15100, Alessandria, Italy. marengoe@tin.it
Robotti
Elisa
E
Bobba
Marco
M
Demartini
Marco
M
Righetti
Pier Giorgio
PG
D045744:Cell Line, Tumor; D015180:Electrophoresis, Gel, Two-Dimensional / Q000379:methods* / Q000706:statistics & numerical data*; D006801:Humans; D016018:Least-Squares Analysis; D008223:Lymphoma / Q000378:metabolism; D015233:Models, Statistical; D012984:Software