Hyperdimensional NMR spectroscopy with nonlinear sampling.
An approach is described for joint interleaved recording, real-time processing, and analysis of NMR data sets. The method employs multidimensional decomposition to find common information in a set of conventional triple-resonance spectra recorded in the nonlinear sampling mode, and builds a model of hyperdimensional (HD) spectrum. While preserving sensitivity per unit of measurement time and allowing for maximal spectral resolution, the approach reduces data collection time on average by 2 orders of magnitude compared to the conventional method. The 7-10 dimensional HD spectrum, which is represented as a set of deconvoluted 1D vectors, is easy to handle and amenable for automated analysis. The method is exemplified by automated assignment for two protein systems of low and high spectral complexity: ubiquitin (globular, 8 kDa) and zetacyt (naturally disordered, 13 kDa). The collection and backbone assignment of the data sets are achieved in real time after approximately 1 and 10 h, respectively. The approach removes the most critical time bottlenecks in data acquisition and analysis. Thus, it can significantly increase the value of NMR spectroscopy in structural biology, for example, in high-throughput structural genomics applications.
Jaravine
Victor A
VA
Swedish NMR Centre, Göteborg University, Box 465, 40530 Göteborg, Sweden.
Zhuravleva
Anastasia V
AV
Permi
Perttu
P
Ibraghimov
Ilgis
I
Orekhov
Vladislav Yu
VY
D000465:Algorithms; D003198:Computer Simulation; D019906:Nuclear Magnetic Resonance, Biomolecular / Q000379:methods*; D012015:Reference Standards; D012680:Sensitivity and Specificity; D013997:Time Factors; D025801:Ubiquitin / Q000737:chemistry*
D025801:Ubiquitin