title: Site-specific microbial communities in three PCB-impacted sediments are associated with different in situ dechlorinating activities.
abstract: Competitive PCR and denaturing HPLC analyses together with an assay detecting potential polychlorinated biphenyl (PCB) dechlorinating activities were combined with physical-chemical site characterizations to identify factors affecting the reductive dechlorination of PCBs in the three historically impacted sediments: Grasse and Buffalo Rivers, NY and Anacostia River, DC. In Grasse River sediment an in situ enriched population of Dehalococcoides phylotypes was abundant in high numbers together with a relatively high dechlorination activity and a high concentration of congeners containing unflanked chlorine substitutions. In contrast microbial communities in Anacostia and Buffalo Rivers sediments consisted of similar total numbers of putative dechlorinating bacteria, but the populations consisted of more diverse putative dechlorinating phylotypes and were associated with lower dechlorination activities and higher concentrations of flanked congeners. Differences observed in the PCB dechlorination activity were not influenced by the chemical PCB availability in spiked sediment or physical sediment characteristics, but were consistent with the concentration of PCBs and total organic carbon in the native sediment. Application of molecular methods for selective detection of indigenous microbial dechlorinating communities combined with assessment of the dechlorinating activity and analysis of the in situ congener profiles provided a comprehensive approach for characterization and identification of sites that are amenable to bioremediation, which is essential for the development of in situ treatment strategies.
authors.affiliation: Center of Marine Biotechnology, University of Maryland Biotechnology Institute, 701 E. Pratt St, Baltimore, MD 21202, USA.
authors.forename: Birthe V
authors.initials: BV
authors.lastname: Kjellerup
authors.forename: Xueli
authors.initials: X
authors.lastname: Sun
authors.forename: Upal
authors.initials: U
authors.lastname: Ghosh
authors.forename: Harold D
authors.initials: HD
authors.lastname: May
authors.forename: Kevin R
authors.initials: KR
authors.lastname: Sowers
mesh_terms: D001673:Biodegradation, Environmental; D002713:Chlorine / Q000378:metabolism*; D041862:Chloroflexi / Q000145:classification* / Q000235:genetics / Q000378:metabolism; D002851:Chromatography, High Pressure Liquid; D004269:DNA, Bacterial / Q000032:analysis / Q000302:isolation & purification; D017753:Ecosystem; D019015:Geologic Sediments / Q000737:chemistry / Q000382:microbiology*; D008969:Molecular Sequence Data; D011078:Polychlorinated Biphenyls / Q000032:analysis* / Q000378:metabolism; D016133:Polymerase Chain Reaction; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D045483:Rivers / Q000737:chemistry / Q000382:microbiology*; D017422:Sequence Analysis, DNA
chemical_list: D004269:DNA, Bacterial; D012336:RNA, Ribosomal, 16S; D002713:Chlorine; D011078:Polychlorinated Biphenyls