title: FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors.
abstract: CONCLUSIONS
  Genomes of more than 60 fungal species have been sequenced to date, yet there has been no systematic approach to analyze fungal transcription factors (TFs) kingdom widely. We developed a standardized pipeline for annotating TFs in fungal genomes. Resulting data have been archived in a new database termed the Fungal Transcription Factor Database (FTFD). In FTFD, 31,832 putative fungal TFs, identified from 62 fungal and 3 Oomycete species, were classified into 61 families and phylogenetically analyzed. The FTFD will serve as a community resource supporting comparative analyses of the distribution and domain structure of TFs within and across species.
  
  
  BACKGROUND
  All data described in this study can be browsed through the FTFD web site at http://ftfd.snu.ac.kr/.
authors.affiliation: Fungal Bioinformatics Laboratory, Seoul National University, Seoul 151-921, Korea.
authors.forename: Jongsun
authors.initials: J
authors.lastname: Park
authors.forename: Jaejin
authors.initials: J
authors.lastname: Park
authors.forename: Suwang
authors.initials: S
authors.lastname: Jang
authors.forename: Seryun
authors.initials: S
authors.lastname: Kim
authors.forename: Sunghyung
authors.initials: S
authors.lastname: Kong
authors.forename: Jaeyoung
authors.initials: J
authors.lastname: Choi
authors.forename: Kyohun
authors.initials: K
authors.lastname: Ahn
authors.forename: Juhyeon
authors.initials: J
authors.lastname: Kim
authors.forename: Seungmin
authors.initials: S
authors.lastname: Lee
authors.forename: Sunggon
authors.initials: S
authors.lastname: Kim
authors.forename: Bongsoo
authors.initials: B
authors.lastname: Park
authors.forename: Kyongyong
authors.initials: K
authors.lastname: Jung
authors.forename: Soonok
authors.initials: S
authors.lastname: Kim
authors.forename: Seogchan
authors.initials: S
authors.lastname: Kang
authors.forename: Yong-Hwan
authors.initials: YH
authors.lastname: Lee
mesh_terms: D002874:Chromosome Mapping / Q000379:methods*; D003628:Database Management Systems; D030562:Databases, Protein; D019143:Evolution, Molecular; D005656:Fungal Proteins / Q000235:genetics*; D023281:Genomics / Q000379:methods; D005810:Multigene Family / Q000235:genetics*; D010802:Phylogeny; D014157:Transcription Factors / Q000235:genetics*
chemical_list: D005656:Fungal Proteins; D014157:Transcription Factors