title: Duplicate ditag analysis in LongSAGE.
abstract: The Long serial analysis of gene expression (SAGE) protocol generates ditags from tags with overlapping overhangs, thereby increasing the probability of duplicate ditag formation in LongSAGE. In this chapter, a tool is presented that facilitates the analysis of duplicate ditags in LongSAGE studies to determine whether they should be included or not.
authors.affiliation: Department of Biochemistry, Chemistry and Environmental Engineering, University of Aalborg, Aalborg, Denmark.
authors.forename: Jeppe
authors.initials: J
authors.lastname: Emmersen
mesh_terms: D001483:Base Sequence; D020224:Expressed Sequence Tags; D020869:Gene Expression Profiling / Q000379:methods* / Q000706:statistics & numerical data; D006801:Humans; D017422:Sequence Analysis, DNA / Q000706:statistics & numerical data; D012984:Software