title: Mechanism of benzaldehyde lyase studied via thiamin diphosphate-bound intermediates and kinetic isotope effects.
abstract: Direct spectroscopic observation of thiamin diphosphate-bound intermediates was achieved on the enzyme benzaldehyde lyase, which carries out reversible and highly enantiospecific conversion of ( R)-benzoin to benzaldehyde. The key enamine intermediate could be observed at lambda max 393 nm in the benzoin breakdown direction and in the decarboxylase reaction starting with benzoylformate. With benzaldehyde as substrate, no intermediates could be detected, only formation of benzoin at 314 nm. To probe the rate-limiting step in the direction of ( R)-benzoin synthesis, the (1)H/ (2)H kinetic isotope effect was determined for benzaldehyde labeled at the aldehyde position and found to be small (1.14 +/- 0.03), indicating that ionization of the C2alphaH from C2alpha-hydroxybenzylthiamin diphosphate is not rate limiting. Use of the alternate substrates benzoylformic and phenylpyruvic acids (motivated by the observation that while a carboligase, benzaldehyde lyase could also catalyze the slow decarboxylation of 2-oxo acids) enabled the observation of the substrate-thiamin covalent intermediate via the 1',4'-iminopyrimidine tautomer, characteristic of all intermediates with a tetrahedral C2 substituent on ThDP. The reaction of benzaldehyde lyase with the chromophoric substrate analogue ( E)-2-oxo-4(pyridin-3-yl)-3-butenoic acid and its decarboxylated product ( E)-3-(pyridine-3-yl)acrylaldehyde enabled the detection of covalent adducts with both. Neither adduct underwent further reaction. An important finding of the studies is that all thiamin-related intermediates are in a chiral environment on benzaldehyde lyase as reflected by their circular dichroism signatures.
authors.affiliation: Department of Chemistry, Rutgers University, Newark, New Jersey 07102, USA.
authors.forename: Sumit
authors.initials: S
authors.lastname: Chakraborty
authors.forename: Natalia
authors.initials: N
authors.lastname: Nemeria
authors.forename: Alejandra
authors.initials: A
authors.lastname: Yep
authors.forename: Michael J
authors.initials: MJ
authors.lastname: McLeish
authors.forename: George L
authors.initials: GL
authors.lastname: Kenyon
authors.forename: Frank
authors.initials: F
authors.lastname: Jordan
mesh_terms: D000171:Acrolein / Q000031:analogs & derivatives / Q000378:metabolism; D000446:Aldehyde-Lyases / Q000378:metabolism*; D001547:Benzaldehydes / Q000378:metabolism; D001573:Benzoin / Q000378:metabolism; D002087:Butyrates / Q000378:metabolism; D002942:Circular Dichroism; D041961:Deuterium Exchange Measurement; D006038:Glyoxylates / Q000378:metabolism; D007700:Kinetics; D008333:Mandelic Acids / Q000378:metabolism; D008956:Models, Chemical; D010667:Phenylpyruvic Acids / Q000378:metabolism; D011551:Pseudomonas fluorescens / Q000201:enzymology; D011725:Pyridines / Q000378:metabolism; D013835:Thiamine Pyrophosphate / Q000378:metabolism
chemical_list: C529114:2-oxo-4-(pyridin-3-yl)-3-butenoic acid; C529115:3-(pyridin-3-yl)acrylaldehyde; D001547:Benzaldehydes; D002087:Butyrates; D006038:Glyoxylates; D008333:Mandelic Acids; D010667:Phenylpyruvic Acids; D011725:Pyridines; C012482:phenylglyoxylic acid; D000171:Acrolein; D000446:Aldehyde-Lyases; C059416:benzaldehyde lyase; D001573:Benzoin; D013835:Thiamine Pyrophosphate; C032175:benzaldehyde; C031606:phenylpyruvic acid