title: Association of ADH and ALDH genes with alcohol dependence in the Irish Affected Sib Pair Study of alcohol dependence (IASPSAD) sample.
abstract: BACKGROUND
  The genes coding for ethanol metabolism enzymes [alcohol dehydrogenase (ADH) and aldehyde dehydrogenase (ALDH)] have been widely studied for their influence on the risk to develop alcohol dependence (AD). However, the relation between polymorphisms of these metabolism genes and AD in Caucasian subjects has not been clearly established. The present study examined evidence for the association of alcohol metabolism genes with AD in the Irish Affected Sib Pair Study of alcohol dependence.
  
  
  METHODS
  We conducted a case-control association study with 575 independent subjects who met Diagnostic and Statistical Manual of Mental Disorders, 4th Edition, AD diagnosis and 530 controls. A total of 77 single nucleotide polymorphisms (SNPs) in the seven ADH (ADH1-7) and two ALDH genes (ALDH1A1 and ALDH2) were genotyped using the Illumina GoldenGate protocols. Several statistical procedures were implemented to control for false discoveries.
  
  
  RESULTS
  All markers with minor allele frequency greater than 0.01 were in Hardy-Weinberg equilibrium. Numerous SNPs in ADH genes showed association with AD, including one marker in the coding region of ADH1C (rs1693482 in exon6, Ile271Gln). Haplotypic association was observed in the ADH5 and ADH1C genes, and in a long haplotype block formed by the ADH1A and ADH1B loci. We detected two significant interactions between pairs of markers in intron 6 of ADH6 and intron 12 of ALDH2 (p = 5 x 10(-5)), and 5' of both ADH4 and ADH1A (p = 2 x 10(-4)).
  
  
  CONCLUSIONS
  We found evidence for the association of several ADH genes with AD in a sample of Western European origin. The significant interaction effects between markers in ADH and ALDH genes suggest possible epistatic roles between alcohol metabolic enzymes in the risk for AD.
authors.affiliation: Institute of Clinical Medicine, College of Medicine, National Cheng Kung University Hospital 138, National Cheng Kung University, Sheng-Li Road, Tainan 704, Taiwan. pkuo@mail.ncku.edu.tw
authors.forename: Po-Hsiu
authors.initials: PH
authors.lastname: Kuo
authors.forename: Gursharan
authors.initials: G
authors.lastname: Kalsi
authors.forename: Carol A
authors.initials: CA
authors.lastname: Prescott
authors.forename: Colin A
authors.initials: CA
authors.lastname: Hodgkinson
authors.forename: David
authors.initials: D
authors.lastname: Goldman
authors.forename: Edwin J
authors.initials: EJ
authors.lastname: van den Oord
authors.forename: Jeffry
authors.initials: J
authors.lastname: Alexander
authors.forename: Cizhong
authors.initials: C
authors.lastname: Jiang
authors.forename: Patrick F
authors.initials: PF
authors.lastname: Sullivan
authors.forename: Diana G
authors.initials: DG
authors.lastname: Patterson
authors.forename: Dermot
authors.initials: D
authors.lastname: Walsh
authors.forename: Kenneth S
authors.initials: KS
authors.lastname: Kendler
authors.forename: Brien P
authors.initials: BP
authors.lastname: Riley
mesh_terms: D000426:Alcohol Dehydrogenase / Q000235:genetics*; D000437:Alcoholism / Q000235:genetics*; D000444:Aldehyde Dehydrogenase / Q000235:genetics*; D000080924:Aldehyde Dehydrogenase 1 Family; D000071396:Aldehyde Dehydrogenase, Mitochondrial; D016022:Case-Control Studies; D004843:Epistasis, Genetic; D005838:Genotype; D006239:Haplotypes; D006801:Humans; D007494:Ireland; D015810:Linkage Disequilibrium; D005810:Multigene Family; D020641:Polymorphism, Single Nucleotide; D050697:Retinal Dehydrogenase
chemical_list: D000426:Alcohol Dehydrogenase; D000080924:Aldehyde Dehydrogenase 1 Family; C096127:ALDH2 protein, human; D000444:Aldehyde Dehydrogenase; D000071396:Aldehyde Dehydrogenase, Mitochondrial; C510223:ALDH1A1 protein, human; D050697:Retinal Dehydrogenase