title: Identification of vibrio cholerae and vibrio mimicus by multilocus sequence analysis (MLSA).
abstract: Vibrio cholerae and Vibrio mimicus have similar phenotypes and genomes making rapid differentiation of these two species difficult. The first standard multilocus sequence analysis (MLSA) scheme for the identification of these species is described. A collection of 45 representative isolates from different geographical regions and hosts was examined using segments of the housekeeping genes pyrH, recA and rpoA. Overall, the closest phylogenetic neighbours of these species were Vibrio furnissii and Vibrio fluvialis. V. cholerae and V. mimicus formed separate species clusters on the basis of each gene, suggesting that these genes are useful as identification markers. These species clusters arose by the accumulation of point mutations. The pyrH gene showed the highest resolution for differentiating V. cholerae and V. mimicus. The maximum interspecies pyrH gene sequence similarity was 91 %. Clearly, V. mimicus strains were more heterogeneous than V. cholerae strains at the three loci. It is suggested that vibrio species may be defined on the basis of MLSA data. A vibrio species was defined as a group of strains forming a monophyletic group on the basis of these loci and with an intraspecific sequence similarity of at least 95 %. V. cholerae and V. mimicus isolates can be readily identified through the open database resource 'The Taxonomy of Vibrios' (http://www.taxvibrio.lncc.br/).
authors.affiliation: Instituto Oswaldo Cruz, Rio de Janeiro, Brazil. thompson@ioc.fiocruz.br
authors.forename: Cristiane C
authors.initials: CC
authors.lastname: Thompson
authors.forename: Fabiano L
authors.initials: FL
authors.lastname: Thompson
authors.forename: Ana Carolina P
authors.initials: AC
authors.lastname: Vicente
mesh_terms: D015373:Bacterial Typing Techniques; D004269:DNA, Bacterial / Q000032:analysis / Q000235:genetics; D012321:DNA-Directed RNA Polymerases / Q000235:genetics*; D006801:Humans; D008969:Molecular Sequence Data; D009703:Nucleoside-Phosphate Kinase / Q000235:genetics*; D010802:Phylogeny; D011938:Rec A Recombinases / Q000235:genetics*; D017422:Sequence Analysis, DNA / Q000379:methods*; D014734:Vibrio cholerae / Q000145:classification* / Q000235:genetics; D044164:Vibrio mimicus / Q000145:classification* / Q000235:genetics
chemical_list: D004269:DNA, Bacterial; C023276:uridine monophosphate kinase; D009703:Nucleoside-Phosphate Kinase; D011938:Rec A Recombinases; D012321:DNA-Directed RNA Polymerases; C113275:RNA polymerase alpha subunit