title: Initial reaction dynamics of proteorhodopsin observed by femtosecond infrared and visible spectroscopy.
abstract: We present a comparative study using femtosecond pump/probe spectroscopy in the visible and infrared of the early photodynamics of solubilized proteorhodopsin (green absorbing variant) in D(2)O with deprotonated (pD 9.2) and protonated (pD 6.4) primary proton acceptor Asp-97. The vis-pump/vis-probe experiments show a kinetic isotope effect that is more pronounced for alkaline conditions, thus decreasing the previously reported pH-dependence of the primary reaction of proteorhodopsin in H(2)O. This points to a pH dependent H-bonding network in the binding pocket of proteorhodopsin, that directly influences the primary photo-induced dynamics. The vis-pump/IR-probe experiments were carried out in two different spectral regions and allowed to monitor the retinal C=C (1500 cm(-1)-1580 cm(-1)) and C=N stretching vibration as well as the amide I mode of the protein (1590 cm(-1)-1680 cm(-1)). Like the FTIR spectra of the K intermediate (PR(K)-PR difference spectra) in this spectral range, the kinetic parameters and also the quantum efficiency of photo-intermediate formation are found to be virtually independent of the pD value.
authors.affiliation: Institute of Physical and Theoretical Chemistry, Johann Wolfgang Goethe-University Frankfurt, Frankfurt/Main, Germany.
authors.forename: Karsten
authors.initials: K
authors.lastname: Neumann
authors.forename: Mirka-Kristin
authors.initials: MK
authors.lastname: Verhoefen
authors.forename: Ingrid
authors.initials: I
authors.lastname: Weber
authors.forename: Clemens
authors.initials: C
authors.lastname: Glaubitz
authors.forename: Josef
authors.initials: J
authors.lastname: Wachtveitl
mesh_terms: D003198:Computer Simulation; D004307:Dose-Response Relationship, Radiation; D007700:Kinetics; D008027:Light; D008956:Models, Chemical; D008958:Models, Molecular; D011829:Radiation Dosage; D012243:Rhodopsin / Q000737:chemistry* / Q000528:radiation effects*; D013055:Spectrophotometry, Infrared
chemical_list: D012243:Rhodopsin