Crystallization and melting of bacteria colonies and Brownian bugs.
Motivated by the existence of remarkably ordered cluster arrays of bacteria colonies growing in Petri dishes and related problems, we study the spontaneous emergence of clustering and patterns in a simple nonequilibrium system: the individual-based interacting Brownian bug model. We map this discrete model into a continuous Langevin equation which is the starting point for our extensive numerical analyses. For the two-dimensional case we report on the spontaneous generation of localized clusters of activity as well as a melting-freezing transition from a disordered or isotropic phase to an ordered one characterized by hexagonal patterns. We study in detail the analogies and differences with the well-established Kosterlitz-Thouless-Halperin-Nelson-Young theory of equilibrium melting, as well as with another competing theory. For that, we study translational and orientational correlations and perform a careful defect analysis. We find a nonstandard one-stage, defect-mediated transition whose nature is only partially elucidated.
Ramos
Francisco
F
Departamento de Electromagnetismo y Física de la Materia and Instituto de Física Teórica y Computacional Carlos I, Facultad de Ciencias, Universidad de Granada, Granada, Spain.
López
Cristóbal
C
Hernández-García
Emilio
E
Muñoz
Miguel A
MA
D018407:Bacterial Physiological Phenomena; D018441:Biofilms / Q000254:growth & development*; D049109:Cell Proliferation; D003198:Computer Simulation; D008954:Models, Biological; D015233:Models, Statistical