Robustness in regulatory networks: a multi-disciplinary approach.
We give in this paper indications about the dynamical impact (as phenotypic changes) coming from the main sources of perturbation in biological regulatory networks. First, we define the boundary of the interaction graph expressing the regulations between the main elements of the network (genes, proteins, metabolites, ...). Then, we search what changes in the state values on the boundary could cause some changes of states in the core of the system (robustness to boundary conditions). After, we analyse the role of the mode of updating (sequential, block sequential or parallel) on the asymptotics of the network, essentially on the occurrence of limit cycles (robustness to updating methods). Finally, we show the influence of some topological changes (e.g. suppression or addition of interactions) on the dynamical behaviour of the system (robustness to topology perturbations).
Demongeot
Jacques
J
TIMC-IMAG (UMR CNRS - UJF - INPG - EPHE 5525), Faculté de Médecine, 38706 La Tronche cedex, France. Jacques.Demongeot@imag.fr
Elena
Adrien
A
Sené
Sylvain
S
D001690:Biological Science Disciplines; D002477:Cells; D008954:Models, Biological