title: Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response.
abstract: BACKGROUND
  Iron homeostasis is a key metabolism for most organisms. In many bacterial species, coordinate regulation of iron homeostasis depends on the protein product of a Fur gene. Fur also plays roles in virulence, acid tolerance, redox-stress responses, flagella chemotaxis and metabolic pathways.
  
  
  RESULTS
  We conducted physiological and transcriptomic studies to characterize Fur in Shewanella oneidensis, with regard to its roles in iron and acid tolerance response. A S. oneidensisfur deletion mutant was defective in growth under iron-abundant or acidic environment. However, it coped with iron depletion better than the wild-type strain MR-1. Further gene expression studies by microarray of the fur mutant confirmed previous findings that iron uptake genes were highly de-repressed in the mutant. Intriguingly, a large number of genes involved in energy metabolism were iron-responsive but Fur-independent, suggesting an intimate relationship of energy metabolism to iron response, but not to Fur. Further characterization of these genes in energy metabolism suggested that they might be controlled by transcriptional factor Crp, as shown by an enriched motif searching algorithm in the corresponding cluster of a gene co-expression network.
  
  
  CONCLUSIONS
  This work demonstrates that S. oneidensis Fur is involved in iron acquisition and acid tolerance response. In addition, analyzing genome-wide transcriptional profiles provides useful information for the characterization of Fur and iron response in S. oneidensis.
authors: Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA. yangy@ornl.gov
authors: Yunfeng
authors: Y
authors: Yang
authors: Daniel P
authors: DP
authors: Harris
authors: Feng
authors: F
authors: Luo
authors: Liyou
authors: L
authors: Wu
authors: Andrea B
authors: AB
authors: Parsons
authors: Anthony V
authors: AV
authors: Palumbo
authors: Jizhong
authors: J
authors: Zhou
mesh_terms: D001426:Bacterial Proteins / Q000235:genetics / Q000378:metabolism*; D002373:Cyclic AMP Receptor Protein / Q000378:metabolism; D004734:Energy Metabolism / Q000235:genetics / Q000502:physiology*; D053263:Gene Regulatory Networks / Q000235:genetics; D006706:Homeostasis / Q000235:genetics / Q000502:physiology*; D007501:Iron / Q000378:metabolism*; D020411:Oligonucleotide Array Sequence Analysis; D010641:Phenotype; D012097:Repressor Proteins / Q000235:genetics / Q000378:metabolism*; D020133:Reverse Transcriptase Polymerase Chain Reaction; D020592:Shewanella / Q000235:genetics / Q000254:growth & development / Q000378:metabolism*
chemical_list: D001426:Bacterial Proteins; D002373:Cyclic AMP Receptor Protein; D012097:Repressor Proteins; C068477:ferric uptake regulating proteins, bacterial; D007501:Iron