title: Overview of kidney and urine proteome databases.
abstract: With the completion or almost completion of genome sequences of many organisms in combination with the tremendous development of mass spectrometric analysis of proteins, several comprehensive proteomic studies, targeting whole organisms, body fluids, organs, tissues, cells, cellular organelles, or functional protein complexes, have produced valuable resources that can be shared and retrieved. In the present review, we provide current concept of construction of protein databases with special emphasis on high-throughput identification of protein using mass spectrometry, annotations, computational tools, and search engines to retrieve information of the identified proteins. We then update the current status of available protein databases of kidney and urine proteomes.
authors.affiliation: Department of Structural Pathology, Institute of Nephrology, Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan.
authors.forename: Yutaka
authors.initials: Y
authors.lastname: Yoshida
authors.forename: Masahito
authors.initials: M
authors.lastname: Miyamoto
authors.forename: Xu
authors.initials: X
authors.lastname: Bo
authors.forename: Eishin
authors.initials: E
authors.lastname: Yaoita
authors.forename: Tadashi
authors.initials: T
authors.lastname: Yamamoto
mesh_terms: D000818:Animals; D015415:Biomarkers / Q000652:urine*; D030562:Databases, Protein / Q000639:trends*; D006801:Humans; D007668:Kidney / Q000502:physiology*; D020543:Proteome; D040901:Proteomics / Q000639:trends*
chemical_list: D015415:Biomarkers; D020543:Proteome