title: Disentangling the rhizosphere effect on nitrate reducers and denitrifiers: insight into the role of root exudates.
abstract: To determine to which extent root-derived carbon contributes to the effects of plants on nitrate reducers and denitrifiers, four solutions containing different proportions of sugar, organic acids and amino acids mimicking maize root exudates were added daily to soil microcosms at a concentration of 150 microg C g(-1) of soil. Water-amended soils were used as controls. After 1 month, the size and structure of the nitrate reducer and denitrifier communities were analysed using the narG and napA, and the nirK, nirS and nosZ genes as molecular markers respectively. Addition of artificial root exudates (ARE) did not strongly affect the structure or the density of nitrate reducer and denitrifier communities whereas potential nitrate reductase and denitrification activities were stimulated by the addition of root exudates. An effect of ARE composition was also observed on N(2)O production with an N(2)O:(N(2)O + N(2)) ratio of 0.3 in microcosms amended with ARE containing 80% of sugar and of 1 in microcosms amended with ARE containing 40% of sugar. Our study indicated that ARE stimulated nitrate reduction or denitrification activity with increases in the range of those observed with the whole plant. Furthermore, we demonstrated that the composition of the ARE affected the nature of the end-product of denitrification and could thus have a putative impact on greenhouse gas emissions.
authors.affiliation: INRA, University of Burgundy, UMR 1229 Soil and Environmental Microbiology, CMSE, Dijon Cedex, France.
authors.forename: S
authors.initials: S
authors.lastname: Henry
authors.forename: S
authors.initials: S
authors.lastname: Texier
authors.forename: S
authors.initials: S
authors.lastname: Hallet
authors.forename: D
authors.initials: D
authors.lastname: Bru
authors.forename: C
authors.initials: C
authors.lastname: Dambreville
authors.forename: D
authors.initials: D
authors.lastname: Chèneby
authors.forename: F
authors.initials: F
authors.lastname: Bizouard
authors.forename: J C
authors.initials: JC
authors.lastname: Germon
authors.forename: L
authors.initials: L
authors.lastname: Philippot
mesh_terms: D001419:Bacteria / Q000145:classification* / Q000302:isolation & purification* / Q000378:metabolism; D001426:Bacterial Proteins / Q000235:genetics; D044822:Biodiversity; D002244:Carbon / Q000378:metabolism; D004269:DNA, Bacterial / Q000737:chemistry / Q000235:genetics; D008969:Molecular Sequence Data; D009566:Nitrates / Q000378:metabolism*; D009573:Nitrites / Q000378:metabolism*; D010084:Oxidation-Reduction; D010088:Oxidoreductases / Q000235:genetics; D018517:Plant Roots / Q000382:microbiology*; D017422:Sequence Analysis, DNA; D012988:Soil Microbiology; D003313:Zea mays
chemical_list: D001426:Bacterial Proteins; D004269:DNA, Bacterial; D009566:Nitrates; D009573:Nitrites; D002244:Carbon; D010088:Oxidoreductases