Draft genome of the medaka fish: a comprehensive resource for medaka developmental genetics and vertebrate evolutionary biology.
The medaka Oryzias latipes is a small egg-laying freshwater teleost, and has become an excellent model system for developmental genetics and evolutionary biology. The medaka genome is relatively small in size, approximately 800 Mb, and the genome sequencing project was recently completed by Japanese research groups, providing a high-quality draft genome sequence of the inbred Hd-rR strain of medaka. In this review, I present an overview of the medaka genome project including genome resources, followed by specific findings obtained with the medaka draft genome. In particular, I focus on the analysis that was done by taking advantage of the medaka system, such as the sex chromosome differentiation and the regional history of medaka species using single nucleotide polymorphisms as genomic markers.
Takeda
Hiroyuki
H
Department of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo 113-0033, Japan. htakeda@biol.s.u-tokyo.ac.jp
D000818:Animals; D002875:Chromosomes; D019295:Computational Biology; D030541:Databases, Genetic; D015509:Developmental Biology / Q000379:methods*; D019143:Evolution, Molecular; D018507:Gene Expression Regulation, Developmental; D005821:Genetic Techniques; D016678:Genome; D023281:Genomics / Q000379:methods; D008957:Models, Genetic; D009990:Oryzias / Q000235:genetics*; D020641:Polymorphism, Single Nucleotide