title: Genome-wide analysis of signaling networks regulating fatty acid-induced gene expression and organelle biogenesis.
abstract: Reversible phosphorylation is the most common posttranslational modification used in the regulation of cellular processes. This study of phosphatases and kinases required for peroxisome biogenesis is the first genome-wide analysis of phosphorylation events controlling organelle biogenesis. We evaluate signaling molecule deletion strains of the yeast Saccharomyces cerevisiae for presence of a green fluorescent protein chimera of peroxisomal thiolase, formation of peroxisomes, and peroxisome functionality. We find that distinct signaling networks involving glucose-mediated gene repression, derepression, oleate-mediated induction, and peroxisome formation promote stages of the biogenesis pathway. Additionally, separate classes of signaling proteins are responsible for the regulation of peroxisome number and size. These signaling networks specify the requirements of early and late events of peroxisome biogenesis. Among the numerous signaling proteins involved, Pho85p is exceptional, with functional involvements in both gene expression and peroxisome formation. Our study represents the first global study of signaling networks regulating the biogenesis of an organelle.
authors.affiliation: Institute for Systems Biology, Seattle, WA 98103, USA.
authors.forename: Ramsey A
authors.initials: RA
authors.lastname: Saleem
authors.forename: Barbara
authors.initials: B
authors.lastname: Knoblach
authors.forename: Fred D
authors.initials: FD
authors.lastname: Mast
authors.forename: Jennifer J
authors.initials: JJ
authors.lastname: Smith
authors.forename: John
authors.initials: J
authors.lastname: Boyle
authors.forename: C Melissa
authors.initials: CM
authors.lastname: Dobson
authors.forename: Rose
authors.initials: R
authors.lastname: Long-O'Donnell
authors.forename: Richard A
authors.initials: RA
authors.lastname: Rachubinski
authors.forename: John D
authors.initials: JD
authors.lastname: Aitchison
mesh_terms: D005227:Fatty Acids / Q000494:pharmacology*; D017353:Gene Deletion; D015966:Gene Expression Regulation, Fungal / Q000187:drug effects*; D017930:Genes, Reporter; D016681:Genome, Fungal; D049452:Green Fluorescent Proteins / Q000235:genetics; D015388:Organelles / Q000235:genetics*; D020675:Peroxisomes / Q000235:genetics* / Q000648:ultrastructure; D012441:Saccharomyces cerevisiae / Q000187:drug effects / Q000235:genetics* / Q000648:ultrastructure
chemical_list: D005227:Fatty Acids; D049452:Green Fluorescent Proteins