title: jSquid: a Java applet for graphical on-line network exploration.
abstract: jSquid is a graph visualization tool for exploring graphs from protein-protein interaction or functional coupling networks. The tool was designed for the FunCoup web site, but can be used for any similar network exploring purpose. The program offers various visualization and graph manipulation techniques to increase the utility for the user.
  
  
  BACKGROUND
  jSquid is available for direct usage and download at http://jSquid.sbc.su.se including source code under the GPLv3 license, and input examples. It requires Java version 5 or higher to run properly.
  
  
  BACKGROUND
  erik.sonnhammer@sbc.su.se
  
  
  BACKGROUND
  Supplementary data are available at Bioinformatics online.
authors.affiliation: Stockholm Bioinformatics Centre, Stockholm University, 10691 Stockholm, Sweden.
authors.forename: Martin
authors.initials: M
authors.lastname: Klammer
authors.forename: Sanjit
authors.initials: S
authors.lastname: Roopra
authors.forename: Erik L L
authors.initials: EL
authors.lastname: Sonnhammer
mesh_terms: D000465:Algorithms; D003196:Computer Graphics; D003198:Computer Simulation; D016247:Information Storage and Retrieval / Q000379:methods*; D008954:Models, Biological; D011381:Programming Languages; D015398:Signal Transduction / Q000502:physiology*; D012984:Software; D014584:User-Computer Interface