title: Common SNP in pre-miR-146a decreases mature miR expression and predisposes to papillary thyroid carcinoma.
abstract: Although papillary thyroid carcinoma (PTC) displays strong heritability, no predisposing germ-line mutations have been found. We show that a common G/C polymorphism (rs2910164) within the pre-miR-146a sequence reduced the amount of pre- and mature miR-146a from the C allele 1.9- and 1.8-fold, respectively, compared with the G allele. This is matched by a similar decrease in the amount of each pre-miR generated from the corresponding pri-miR-146a in an in vitro processing reaction. The C allele also interfered with the binding of a nuclear factor to pre-miR-146a. The reduction in miR-146a led to less efficient inhibition of target genes involved in the Toll-like receptor and cytokine signaling pathway (TRAF6, IRAK1), and PTC1 (also known as CCDC6 or H4), a gene frequently rearranged with RET proto-oncogene in PTC. In an association study of 608 PTC patients and 901 controls, we found marked differences in genotype distribution of rs2910164 (P = 0.000002), the GC heterozygous state being associated with an increased risk of acquiring PTC (odds ratio = 1.62, P = 0.000007), and both homozygous states protective with odds ratio = 0.42 for the CC genotype (P = 0.003) and odds ratio = 0.69 for the GG genotype (P = 0.0006). Moreover, 4.7% of tumors had undergone somatic mutations of the SNP sequence. Thus, our data suggest that a common polymorphism in pre-miR-146a affects the miR expression, contributes to the genetic predisposition to PTC, and plays a role in the tumorigenesis through somatic mutation. Preliminary evidence suggests that these effects are mediated through target genes whose expression is affected by the SNP status.
authors.affiliation: Human Cancer Genetics Program, Comprehensive Cancer Center, Ohio State University, 850 Biomedical Research Tower, 460 West 12th Avenue, Columbus, OH 43210, USA.
authors.forename: Krystian
authors.initials: K
authors.lastname: Jazdzewski
authors.forename: Elizabeth L
authors.initials: EL
authors.lastname: Murray
authors.forename: Kaarle
authors.initials: K
authors.lastname: Franssila
authors.forename: Barbara
authors.initials: B
authors.lastname: Jarzab
authors.forename: Daniel R
authors.initials: DR
authors.lastname: Schoenberg
authors.forename: Albert
authors.initials: A
authors.lastname: de la Chapelle
mesh_terms: D000483:Alleles; D002277:Carcinoma / Q000209:etiology / Q000235:genetics*; D016022:Case-Control Studies; D045744:Cell Line, Tumor; D015331:Cohort Studies; D020022:Genetic Predisposition to Disease; D005838:Genotype; D006801:Humans; D035683:MicroRNAs / Q000096:biosynthesis / Q000235:genetics* / Q000378:metabolism; D009154:Mutation; D020641:Polymorphism, Single Nucleotide; D000090063:Proto-Oncogene Mas; D013964:Thyroid Neoplasms / Q000209:etiology / Q000235:genetics*; D014162:Transfection
chemical_list: C000715470:MAS1 protein, human; C542542:MIRN146 microRNA, human; D035683:MicroRNAs; D000090063:Proto-Oncogene Mas