[Evaluation of gene index for identification of Byssochlamys spp].
Comparative sequence analysis was performed on the 18S rRNA gene (1,676 bp), 26/28S rRNA gene D2 region (321 bp) and lys2 (997 bp) to evaluate the gene index for rapid, accurate and convenient identification of Byssochlamys spp. and related species. The results showed that 26 strains (11 species) of the clade could be identified or grouped by means of each gene sequence. The highest resolution to discriminate these species was observed with lys2, but 26/28S rRNA gene D2 region was considered to be the best index for convenient identification. In addition, phylogenetic analysis based on these genes indicated that genus Byssochlamys is not monophyletic, although species in the clade are closely related to each other. Re-classification will be necessary, based on detailed morphological observations.
Watanabe
Maiko
M
Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan.
Kato
Yuko
Y
Togami
Keiko
K
Yamanaka
Mikiko
M
Wakabayashi
Keiko
K
Ogawa
Hiroyuki
H
Wasada
Yuko
Y
Goto
Keiichi
K
Hara-Kudo
Yukiko
Y
Amano
Norihide
N
Yokota
Akira
A
D015074:2-Aminoadipic Acid / Q000235:genetics; D001203:Ascomycota / Q000145:classification / Q000235:genetics* / Q000302:isolation & purification*; D010802:Phylogeny; D012331:RNA, Fungal / Q000235:genetics; D012337:RNA, Ribosomal, 18S / Q000235:genetics; D012339:RNA, Ribosomal, 28S / Q000235:genetics; D017422:Sequence Analysis, DNA; D017423:Sequence Analysis, RNA
D012331:RNA, Fungal; D012337:RNA, Ribosomal, 18S; D012339:RNA, Ribosomal, 28S; D015074:2-Aminoadipic Acid