title: Applicability of the functional gene catechol 1,2-dioxygenase as a biomarker in the detection of BTEX-degrading Rhodococcus species.
abstract: OBJECTIVE
  Catechol 1,2-dioxygenase is a key enzyme in the degradation of monoaromatic pollutants. The detection of this gene is in focus today but recently designed degenerate primers are not always suitable. Rhodococcus species are important members of the bacterial community involved in the degradation of aromatic contaminants and their specific detection could help assess functions and activities in the contaminated environments. To reach this aim, specific PCR primer sets were designed for the detection of Rhodococcus related catechol 1,2-dioxygenase genes.
  
  
  RESULTS
  Primers were tested with genetically well-characterized strains isolated in this study and community DNA samples were used as template for Rhodococcus specific PCR as well. The sequences of the catabolic gene in question were subjected to multiple alignment and a phylogenetic tree was created and compared to a 16S rRNA gene based Rhodococcus tree. A strong coherence was observed between the phylogenetic trees.
  
  
  CONCLUSIONS
  The results strongly support the opinion that there was no recent lateral gene transfer among Rhodococcus species in the case of catechol 1,2-dioxygenase.
  
  
  CONCLUSIONS
  In gasoline contaminated environments, aromatic hydrocarbon degrading Rhodococcus populations can be identified based upon the detection and sequence analysis of catechol 1,2-dioxygenase gene.
authors.affiliation: Department of Microbiology, Eötvös Loránd University, Budapest, Hungary.
authors.forename: A
authors.initials: A
authors.lastname: Táncsics
authors.forename: S
authors.initials: S
authors.lastname: Szoboszlay
authors.forename: B
authors.initials: B
authors.lastname: Kriszt
authors.forename: J
authors.initials: J
authors.lastname: Kukolya
authors.forename: E
authors.initials: E
authors.lastname: Baka
authors.forename: K
authors.initials: K
authors.lastname: Márialigeti
authors.forename: S
authors.initials: S
authors.lastname: Révész
mesh_terms: D001554:Benzene / Q000378:metabolism; D001555:Benzene Derivatives / Q000378:metabolism; D001673:Biodegradation, Environmental; D050548:Catechol 1,2-Dioxygenase / Q000235:genetics*; D004784:Environmental Monitoring / Q000379:methods; D009930:Organic Chemicals / Q000378:metabolism*; D010802:Phylogeny; D016133:Polymerase Chain Reaction / Q000379:methods; D012240:Rhodococcus / Q000201:enzymology / Q000235:genetics / Q000302:isolation & purification*; D014050:Toluene / Q000378:metabolism; D014871:Water Microbiology; D014992:Xylenes / Q000378:metabolism
chemical_list: D001555:Benzene Derivatives; D009930:Organic Chemicals; D014992:Xylenes; D014050:Toluene; D050548:Catechol 1,2-Dioxygenase; D001554:Benzene; C004912:ethylbenzene