A ChIP-cloning approach linking SIRT1 to transcriptional modificationof DNA targets.
The mammalian protein deacetylase SIRT1 (sirtuin1) is widely recognized for its link to calorie restriction and longevity. SIRT1 not only modulates the function of protein targets such as p53 or NFkappaB, but it also affects gene transcription by causing hypoacetylation of associated nucleosomal histones. However, the identification of SIRT1-specific DNA targets that confer chromosomal stability and cell longevity have remained elusive. Here, we report the usefulness of a ChIP-cloning approach for the identification of an endogenous DNA target intimately linked with SIRT1 activity. Using the aforementioned technique, we identified a gene encoding the neuro-oncological ventral antigen2 (nova2) as a SIRT1 target. Nova2 regulates the alternative splicing of scn1a, which encodes the alpha-subunit of a neuronal sodium channel targeted by antiepileptic drugs. This finding demonstrates that ChIP-cloning is an innovative approach for the identification of SIRT1-specific DNA targets.
Department of Neuroscience, New York College of Osteopathic Medicine of New York Institute of Technology, Old Westbury, NY 11568, USA.
German
G
Torres
Patrick D
PD
Frisella
Salman J
SJ
Yousuf
Samina
S
Sarwar
Lauren
L
Baldinger
Sherry M
SM
Zakhary
Joerg R
JR
Leheste
D047369:Chromatin Immunoprecipitation; D006801:Humans; D009419:Nerve Tissue Proteins / Q000235:genetics*; D000090682:Neuro-Oncological Ventral Antigen; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D016601:RNA-Binding Proteins / Q000235:genetics*; D056564:Sirtuin 1; D037761:Sirtuins / Q000502:physiology*; D014158:Transcription, Genetic
C406163:NOVA2 protein, human; D009419:Nerve Tissue Proteins; D000090682:Neuro-Oncological Ventral Antigen; D016601:RNA-Binding Proteins; C447939:SIRT1 protein, human; D056564:Sirtuin 1; D037761:Sirtuins