Site-specific unfolding thermodynamics of a helix-turn-helix protein.
The thermal unfolding of a 40-residue helix-turn-helix subdomain of the P22 viral coat protein was investigated using circular dichroism (CD) and Fourier transform infrared spectroscopy (FTIR) with site-specific 13C isotopic labeling. Helix-turn-helix is the simplest alpha-helical structural motif that combines both secondary and tertiary structural elements. The CD of individual helical fragments reveals that the P22 subdomain is stabilized by tertiary interhelical interactions. Overall the temperature-dependent CD and FTIR data can be described by a three-state process with a partially folded intermediate. However, the analysis of the site-specific 13C IR signals reveals distinct unfolding thermodynamics for each of the labeled sites. The thermodynamic parameters of the thermal unfolding of each of the labeled segments were obtained using singular value decomposition in combination with target transformation and global fitting. The P22 subdomain unfolds from the N-terminus toward the helical segments near the turn. Our results show that as few as two 13C labeled residues can be detected in a 40 residue protein and provide local, site-specific structural information about protein unfolding, which is not resolved by standard, nonsite-specific spectroscopic probes.
Amunson
Krista E
KE
Department of Chemistry, University of Wyoming, 1000 East University Avenue, Laramie, Wyoming 82071, USA.
Ackels
Loren
L
Kubelka
Jan
J
D036022:Capsid Proteins / Q000737:chemistry; D002247:Carbon Isotopes; D002942:Circular Dichroism; D019077:Helix-Turn-Helix Motifs; D010446:Peptide Fragments / Q000737:chemistry; D011487:Protein Conformation; D011489:Protein Denaturation; D017550:Spectroscopy, Fourier Transform Infrared / Q000379:methods*; D013696:Temperature; D013816:Thermodynamics
D036022:Capsid Proteins; D002247:Carbon Isotopes; D010446:Peptide Fragments