Modeling development: spikes of the sea urchin.
Modeling of specification events during development poses new challenges to biochemical modeling. These include data limitations and a notorious absence of homeostasis in developing systems. The sea urchin is one of the best studied model organisms concerning development and a network, the Endomesoderm Network, has been proposed that is presumed to control endoderm and mesoderm specification in the embryo of Strongy-locentrotus purpuratus. We have constructed a dynamic model of a subnetwork of the Endomesoderm Network. In constructing the model, we had to resolve the following issues: choice of appropriate subsystem, assignment of embryonic data to cellular model, choice of appropriate kinetics. Although the resulting model is capable of reproducing fractions of the experimental data, it falls short of reproducing specification of cell types. These findings can facilitate the refinement of the Endomesoderm Network.
Kühn
Clemens
C
Max-Planck-Institute for Molecular Genetics, Ihnestr 63-73, 14195 Berlin, Germany. kuehn@molgen.mpg.de
Kühn
Alexander
A
Poustka
Albert J
AJ
Klipp
Edda
E
D000818:Animals; D008954:Models, Biological; D012333:RNA, Messenger / Q000235:genetics; D012617:Sea Urchins / Q000033:anatomy & histology* / Q000235:genetics
D012333:RNA, Messenger