LocalMove: computing on-lattice fits for biopolymers.
Given an input Protein Data Bank file (PDB) for a protein or RNA molecule, LocalMove is a web server that determines an on-lattice representation for the input biomolecule. The web server implements a Markov Chain Monte-Carlo algorithm with simulated annealing to compute an approximate fit for either the coarse-grain model or backbone model on either the cubic or face-centered cubic lattice. LocalMove returns a PDB file as output, as well as dynamic movie of 3D images of intermediate conformations during the computation. The LocalMove server is publicly available at http://bioinformatics.bc.edu/clotelab/localmove/.
Ponty
Y
Y
Department of Biology, Boston College, Chestnut Hill, MA 02467, USA.
Istrate
R
R
Porcelli
E
E
Clote
P
P
D000465:Algorithms; D020407:Internet; D008958:Models, Molecular; D009690:Nucleic Acid Conformation; D011487:Protein Conformation; D012313:RNA / Q000737:chemistry*; D012984:Software
D012313:RNA