title: Stabilization provided by neighboring strands is critical for the mechanical stability of proteins.
abstract: Single-molecule force spectroscopy studies and steered molecular dynamics simulations have revealed that protein topology and pulling geometry play important roles in determining the mechanical stability of proteins. Most studies have focused on local interactions that are associated with the force-bearing beta-strands. Interactions mediated by neighboring strands are often overlooked. Here we use Top7 and barstar as model systems to illustrate the critical importance of the stabilization effect provided by neighboring beta-strands on the mechanical stability. Using single-molecule atomic force microscopy, we showed that Top7 and barstar, which have similar topology in their force-bearing region, exhibit vastly different mechanical-stability characteristics. Top7 is mechanically stable and unfolds at approximately 150 pN, whereas barstar is mechanically labile and unfolds largely below 50 pN. Steered molecular dynamics simulations revealed that stretching force peels one force-bearing strand away from barstar to trigger unfolding, whereas Top7 unfolds via a substructure-sliding mechanism. This previously overlooked stabilization effect from neighboring beta-strands is likely to be a general mechanism in protein mechanics and can serve as a guideline for the de novo design of proteins with significant mechanical stability and novel protein topology.
authors.affiliation: Department of Chemistry, University of British Columbia, Vancouver, Canada.
authors.forename: Deepak
authors.initials: D
authors.lastname: Sharma
authors.forename: Gang
authors.initials: G
authors.lastname: Feng
authors.forename: Dingyue
authors.initials: D
authors.lastname: Khor
authors.forename: Georgi Z
authors.initials: GZ
authors.lastname: Genchev
authors.forename: Hui
authors.initials: H
authors.lastname: Lu
authors.forename: Hongbin
authors.initials: H
authors.lastname: Li
mesh_terms: D001426:Bacterial Proteins / Q000737:chemistry* / Q000378:metabolism / Q000648:ultrastructure; D001696:Biomechanical Phenomena; D002942:Circular Dichroism; D003198:Computer Simulation; D018625:Microscopy, Atomic Force; D008958:Models, Molecular; D017510:Protein Folding; D017433:Protein Structure, Secondary; D011994:Recombinant Proteins / Q000737:chemistry*; D013816:Thermodynamics
chemical_list: D001426:Bacterial Proteins; D011994:Recombinant Proteins; C057438:barstar protein, Bacillus amyloliquefaciens