title: Taxonomy of oxalotrophic Methylobacterium strains.
abstract: Most of the oxalotrophic bacteria are facultative methylotrophs and play important ecological roles in soil fertility and cycling of elements. This study gives a detailed picture of the taxonomy and diversity of these bacteria and provides new information about the taxonomical variability within the genus Methylobacterium. Twelve mesophilic, pink-pigmented, and facultatively methylotrophic oxalate-oxidizing strains were included in this work that had been previously isolated from the soil and some plant tissues by the potassium oxalate enrichment method. The isolates were characterized using biochemical tests, cellular lipid profiles, spectral characteristics of carotenoid pigments, G+C content of the DNA, and 16S rDNA sequencing. The taxonomic similarities among the strains were analyzed using the simple matching (S (SM)) and Jaccard (S (J)) coefficients, and the UPGMA clustering algorithm. The phylogenetic position of the strains was inferred by the neighbor-joining method on the basis of the 16S rDNA sequences. All isolates were Gram-negative, facultatively methylotrophic, oxidase and catalase positive, and required no growth factors. Based on the results of numerical taxonomy, the strains formed four closely related clusters sharing > or =85% similarity. Analysis of the 16S rDNA sequences demonstrated that oxalotrophic, pink-pigmented, and facultatively methylotrophic strains could be identified as members of the genus Methylobacterium. Except for M. variabile and M. aquaticum, all of the Methylobacterium type strains tested had the ability of oxalate utilization. Our results indicate that the capability of oxalate utilization seems to be an uncommon trait and could be used as a valuable taxonomic criterion for differentiation of Methylobacterium species.
authors.affiliation: Egitim Fakultesi, Mugla University, 48170 Kotekli, Mugla, Turkey. nsahin@mu.edu.tr
authors.forename: Nurettin
authors.initials: N
authors.lastname: Sahin
authors.forename: Yuko
authors.initials: Y
authors.lastname: Kato
authors.forename: Ferah
authors.initials: F
authors.lastname: Yilmaz
mesh_terms: D000465:Algorithms; D001482:Base Composition; D004269:DNA, Bacterial / Q000235:genetics; D004275:DNA, Ribosomal / Q000235:genetics; D004798:Enzymes / Q000378:metabolism; D020580:Methylobacterium / Q000145:classification* / Q000235:genetics* / Q000502:physiology; D009005:Monosaccharides / Q000378:metabolism; D010070:Oxalates / Q000378:metabolism*; D010802:Phylogeny; D012329:RNA, Bacterial / Q000235:genetics; D012336:RNA, Ribosomal, 16S / Q000235:genetics*
chemical_list: D004269:DNA, Bacterial; D004275:DNA, Ribosomal; D004798:Enzymes; D009005:Monosaccharides; D010070:Oxalates; D012329:RNA, Bacterial; D012336:RNA, Ribosomal, 16S