title: Potential for modulation of the hydrophobic effect inside chaperonins.
abstract: Despite the spontaneity of some in vitro protein-folding reactions, native folding in vivo often requires the participation of barrel-shaped multimeric complexes known as chaperonins. Although it has long been known that chaperonin substrates fold upon sequestration inside the chaperonin barrel, the precise mechanism by which confinement within this space facilitates folding remains unknown. We examine the possibility that the chaperonin mediates a favorable reorganization of the solvent for the folding reaction. We discuss the effect of electrostatic charge on solvent-mediated hydrophobic forces in an aqueous environment. Based on these physical arguments, we construct a simple, phenomenological theory for the thermodynamics of density and hydrogen-bond order fluctuations in liquid water. Within the framework of this model, we investigate the effect of confinement inside a chaperonin-like cavity on the configurational free energy of water by calculating solvent free energies for cavities corresponding to the different conformational states in the ATP-driven catalytic cycle of the prokaryotic chaperonin GroEL. Our findings suggest that one function of chaperonins may involve trapping unfolded proteins and subsequently exposing them to a microenvironment in which the hydrophobic effect, a crucial thermodynamic driving force for folding, is enhanced.
authors.affiliation: Department of Physics, Stanford University, Stanford, California 94305, USA.
authors.forename: Jeremy L
authors.initials: JL
authors.lastname: England
authors.forename: Vijay S
authors.initials: VS
authors.lastname: Pande
mesh_terms: D002384:Catalysis; D018834:Chaperonin 60 / Q000737:chemistry* / Q000378:metabolism*; D003600:Cytosol / Q000378:metabolism; D057927:Hydrophobic and Hydrophilic Interactions; D008958:Models, Molecular; D049329:Nanostructures; D011487:Protein Conformation / Q000187:drug effects; D017510:Protein Folding; D012997:Solvents / Q000494:pharmacology; D055672:Static Electricity; D013379:Substrate Specificity; D013499:Surface Properties; D013816:Thermodynamics; D014867:Water / Q000494:pharmacology
chemical_list: D018834:Chaperonin 60; D012997:Solvents; D014867:Water