Pedobacter agri sp. nov., from soil.
A Gram-negative strain, PB92(T), which belongs to the family Sphingobacteriaceae, was isolated from soil (Daejeon, Korea). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain PB92(T) was associated with the genus Pedobacter and was most closely related to the type strains Pedobacter sandarakinus DS-27(T) (97.7 %), Pedobacter roseus CL-GP80(T) (97.5 %) and Pedobacter suwonensis 15-52(T) (97.5 %). The major cellular fatty acid components of strain PB92(T) were C(16 : 1)omega7c (21.4 %), iso-C(15 : 0) (30.8 %), iso-C(17 : 0) 3-OH (9.3 %) and iso-C(15 : 0) 2-OH (11.2 %). The G+C content of the genomic DNA from strain PB92(T) was 41.4 mol%. Analysis of 16S rRNA gene sequences, as well as physiological and biochemical tests, indicated that strain PB92(T) could be differentiated genotypically and phenotypically from reference species of the genus Pedobacter. Strain PB92(T) (=KCTC 12511(T)=DSM 19486(T)) is proposed as the type strain of a novel species, Pedobacter agri sp. nov.
Roh
Seong Woon
SW
Korea University of Science and Technology, Daejeon 305-333, Republic of Korea.
Quan
Zhe-Xue
ZX
Nam
Young-Do
YD
Chang
Ho-Won
HW
Kim
Kyoung-Ho
KH
Kim
Myung-Kyum
MK
Im
Wan-Taek
WT
Jin
Long
L
Kim
Seung-Hye
SH
Lee
Sung-Taik
ST
Bae
Jin-Woo
JW
D041963:Bacteroidetes / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification; D008969:Molecular Sequence Data; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012988:Soil Microbiology; D013045:Species Specificity
D012336:RNA, Ribosomal, 16S