title: Energy transport in peptide helices: a comparison between high- and low-energy excitations.
abstract: Energy transport in a short helical peptide in chloroform solution is studied by time-resolved femtosecond spectroscopy and accompanying nonequilibrium molecular dynamics (MD) simulations. In particular, the heat transport after excitation of an azobenzene chromophore attached to one terminus of the helix with 3 eV (UV) photons is compared to the excitation of a peptide C=O oscillator with 0.2 eV (IR) photons. The heat in the helix is detected at various distances from the heat source as a function of time by employing vibrational pump-probe spectroscopy. As a result, the carbonyl oscillators at different positions along the helix act as local thermometers. The experiments show that heat transport through the peptide after excitation with low-energy photons is at least 4 times faster than after UV excitation. On the other hand, the heat transport obtained by nonequilibrium MD simulations is largely insensitive to the kind of excitation. The calculations agree well with the experimental results for the low-frequency case; however, they give a factor of 5 too fast energy transport for the high-energy case. Employing instantaneous normal mode calculations of the MD trajectories, a simple harmonic model of heat transport is adopted, which shows that the heat diffusivity decreases significantly at temperatures initially reached by high-energy excitation. This finding suggests that the photoinduced energy gets trapped, if it is deposited in high amounts. The various competing mechanisms, such as vibrational T(1) relaxation, resonant transfer between excitonic states, cascading down relaxation, and low-frequency mode transfer, are discussed in detail.
authors.affiliation: Physikalisch-Chemisches Institut, Universitat Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland.
authors.forename: Ellen H G
authors.initials: EH
authors.lastname: Backus
authors.forename: Phuong H
authors.initials: PH
authors.lastname: Nguyen
authors.forename: Virgiliu
authors.initials: V
authors.lastname: Botan
authors.forename: Rolf
authors.initials: R
authors.lastname: Pfister
authors.forename: Alessandro
authors.initials: A
authors.lastname: Moretto
authors.forename: Marco
authors.initials: M
authors.lastname: Crisma
authors.forename: Claudio
authors.initials: C
authors.lastname: Toniolo
authors.forename: Gerhard
authors.initials: G
authors.lastname: Stock
authors.forename: Peter
authors.initials: P
authors.lastname: Hamm
mesh_terms: D004735:Energy Transfer; D010455:Peptides / Q000737:chemistry*; D017785:Photons; D017433:Protein Structure, Secondary; D011789:Quantum Theory; D013057:Spectrum Analysis; D014466:Ultraviolet Rays
chemical_list: D010455:Peptides