title: Characterization of the human CIDEA promoter in fat cells.
abstract: BACKGROUND
  Cell death-inducing DFFA (DNA fragmentation factor-alpha)-like effector A (CIDEA) is a protein that regulates lipolysis in human adipocytes through cross-talk involving tumor necrosis factor-alpha (TNF-alpha). TNF-alpha downregulates CIDEA mRNA although it is unclear whether this is mediated through transcriptional or post-transcriptional mechanisms. CIDEA has important metabolic effects in human fat cells and genetic variations in the human CIDEA gene have been correlated to the development of obesity. However, little is known about the factors regulating CIDEA expression in human adipocytes. We set out to describe the transcriptional control of human CIDEA.
  
  
  METHODS
  A 1.1-kb genomic fragment upstream of the transcriptional start site (TSS) of human CIDEA was cloned and deletion fragments were generated. Transcriptional activity of the promoter was analyzed by luciferase reporter assays in in vitro-differentiated human adipocytes. The effect of TNF-alpha was assessed in human adipocytes and murine 3T3-L1 cells transfected with deletion fragments of the CIDEA promoter. Protein-DNA interactions were analyzed by electrophoretic mobility shift assays (EMSA).
  
  
  RESULTS
  Basal transcriptional activity was found in a 97-bp region upstream of the TSS. We studied the effect of three common haplotypes in the promoter region but found no significant difference in transcriptional activity among them. Incubation of in vitro-differentiated human adipocytes as well as 3T3-L1 cells with TNF-alpha reduced the transcriptional activity of the human CIDEA promoter, demonstrating a direct effect on CIDEA transcription. EMSAs and mutational analysis indicated that this was mediated by a nuclear factor-kappaB (NF-kappaB) site at position -163/-151.
  
  
  CONCLUSIONS
  We demonstrate that basal transcription of the human CIDEA gene is confined to the 97 first bases upstream of TSS and that TNF-alpha negatively regulates transcription of this gene, which at least in part involves NF-kappaB activation.
authors.affiliation: Department of Medicine, Huddinge, Lipid Laboratory, Novum, Karolinska Institutet, Stockholm, Sweden. amanda.pettersson@ki.se
authors.forename: A T
authors.initials: AT
authors.lastname: Pettersson
authors.forename: J
authors.initials: J
authors.lastname: Laurencikiene
authors.forename: E A
authors.initials: EA
authors.lastname: Nordström
authors.forename: B M
authors.initials: BM
authors.lastname: Stenson
authors.forename: V
authors.initials: V
authors.lastname: van Harmelen
authors.forename: C
authors.initials: C
authors.lastname: Murphy
authors.forename: I
authors.initials: I
authors.lastname: Dahlman
authors.forename: M
authors.initials: M
authors.lastname: Rydén
mesh_terms: D024506:5' Flanking Region / Q000235:genetics; D017667:Adipocytes / Q000378:metabolism*; D000818:Animals; D051017:Apoptosis Regulatory Proteins / Q000096:biosynthesis / Q000235:genetics*; D001483:Base Sequence; D002478:Cells, Cultured; D019295:Computational Biology / Q000379:methods; D005786:Gene Expression Regulation / Q000502:physiology; D006801:Humans; D008099:Liver / Q000378:metabolism; D051379:Mice; D008969:Molecular Sequence Data; D016328:NF-kappa B / Q000378:metabolism; D047495:PPAR gamma / Q000819:agonists; D020641:Polymorphism, Single Nucleotide; D011401:Promoter Regions, Genetic; D012333:RNA, Messenger / Q000235:genetics; D051381:Rats; D013045:Species Specificity; D050151:Subcutaneous Fat / Q000166:cytology / Q000378:metabolism; D024363:Transcription Initiation Site; D014158:Transcription, Genetic; D014409:Tumor Necrosis Factor-alpha / Q000502:physiology
chemical_list: D051017:Apoptosis Regulatory Proteins; C502539:CIDEA protein, human; D016328:NF-kappa B; D047495:PPAR gamma; D012333:RNA, Messenger; D014409:Tumor Necrosis Factor-alpha