title: Identification and characterization of differentially expressed genes in the resistance reaction in taro infected with Phytophthora colocasiae.
abstract: Leaf blight disease caused by Phytophthora colocasiae represents a major constraint to the growth and yield of taro (Colocasia esculenta L.). Ongoing research on model plant systems has revealed that defense responses are activated via signaling pathways mediated by endogenous signaling molecule such as salicylic acid, jasmonic acid, and ethylene. Activation of plant defenses is associated with changes in the expression of large number of genes. To gain a better understanding of defense responses, virulent race of P. colocasiae was used to inoculate the taro cultivar UL-56 (compatible) and its nearly isogenic line Muktakeshi (incompatible). We have employed suppressive subtractive hybridization (SSH), cDNA libraries, Northern blot analysis, high throughput DNA sequencing, and bioinformatics to identify the defense-related genes in taro induced by P. colocasiae infection. Two putative resistance genes and a transcription factor were identified among the upregulated sequences. The expression of several candidate genes including lipid transfer proteins (LTPs), and other pathogenesis-related genes were evaluated following 8-48 h of appearance of symptom in compatible and incompatible interactions. Results confirmed the higher overall expression of these genes in Muktakeshi (resistant) compared to UL-56 (susceptible). This study constitutes the first attempt to characterize the taro differential transcriptome associated with host-pathogen interactions from different genotypes. All the generated ESTs have been submitted to GenBank for further functional studies.
authors.affiliation: Central Tuber Crops Research Institute, Thiruvananthapuram, Kerala, 695017, India.
authors.forename: Kamal
authors.initials: K
authors.lastname: Sharma
authors.forename: Ajay Kumar
authors.initials: AK
authors.lastname: Mishra
authors.forename: Raj Shekhar
authors.initials: RS
authors.lastname: Misra
mesh_terms: D001483:Base Sequence; D031060:Colocasia / Q000235:genetics / Q000276:immunology / Q000469:parasitology*; D020224:Expressed Sequence Tags; D020869:Gene Expression Profiling; D018506:Gene Expression Regulation, Plant / Q000276:immunology*; D007109:Immunity / Q000235:genetics; D008969:Molecular Sequence Data; D010838:Phytophthora / Q000276:immunology*; D010935:Plant Diseases / Q000235:genetics / Q000276:immunology; D014157:Transcription Factors / Q000235:genetics; D015854:Up-Regulation
chemical_list: D014157:Transcription Factors