title: At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana.
abstract: Gene expression maps for model organisms, including Arabidopsis thaliana, have typically been created using gene-centric expression arrays. Here, we describe a comprehensive expression atlas, Arabidopsis thaliana Tiling Array Express (At-TAX), which is based on whole-genome tiling arrays. We demonstrate that tiling arrays are accurate tools for gene expression analysis and identified more than 1,000 unannotated transcribed regions. Visualizations of gene expression estimates, transcribed regions, and tiling probe measurements are accessible online at the At-TAX homepage.
authors.affiliation: Department of Molecular Biology, Max Planck Institute for Developmental Biology, Spemannstr, 37-39, 72076 Tübingen, Germany. sascha.laubinger@tuebingen.mpg.de
authors.forename: Sascha
authors.initials: S
authors.lastname: Laubinger
authors.forename: Georg
authors.initials: G
authors.lastname: Zeller
authors.forename: Stefan R
authors.initials: SR
authors.lastname: Henz
authors.forename: Timo
authors.initials: T
authors.lastname: Sachsenberg
authors.forename: Christian K
authors.initials: CK
authors.lastname: Widmer
authors.forename: Naïra
authors.initials: N
authors.lastname: Naouar
authors.forename: Marnik
authors.initials: M
authors.lastname: Vuylsteke
authors.forename: Bernhard
authors.initials: B
authors.lastname: Schölkopf
authors.forename: Gunnar
authors.initials: G
authors.lastname: Rätsch
authors.forename: Detlef
authors.initials: D
authors.lastname: Weigel
mesh_terms: D017360:Arabidopsis / Q000235:genetics* / Q000254:growth & development*; D020869:Gene Expression Profiling; D018507:Gene Expression Regulation, Developmental; D018506:Gene Expression Regulation, Plant; D018745:Genome, Plant; D020411:Oligonucleotide Array Sequence Analysis; D009862:Online Systems; D026723:Polyadenylation; D012333:RNA, Messenger / Q000737:chemistry / Q000378:metabolism; D012984:Software
chemical_list: D012333:RNA, Messenger