Molecular dynamics simulations of a lipovitellin-derived amphiphilic beta-sheet homologous to apoB-100 beta-sheets at a hydrophobic decane-water interface.
Lipovitellin, an egg-yolk lipoprotein, transports lipids in a pocket surrounded by amphiphilic beta-sheets. Its X-ray structure provides possibilities to study interactions between lipophilic beta-sheets and lipids at the atomic level. Here, we studied a 67-residue-long amphiphilic beta-sheet of lipovitellin previously suggested a suitable working model for studies of the lipid-binding behaviour of amphiphilic beta-sheet regions in apolipoprotein B-100 (apoB-100). We performed four molecular dynamics simulations with different starting configurations to define characteristics of the amphiphilic beta-sheet model at a decane-water interface. In each simulation the model beta-sheet bound keenly to the decane layer via its hydrophobic surface. The structural profiles showed unchanged secondary structure of the beta-sheet during the attachment. Also, aromatic side chains, especially tryptophans and tyrosines, mediated the attachment to the hydrophobic layer and influenced the orientation of the decane molecules that are in contact with the beta-sheet. In conclusion, the present simulations reveal high affinity of a lipovitellin-derived amphiphilic beta-sheet to a hydrophobic decane layer. They lay thereby the basis for further studies of the interaction between amphiphilic beta-sheets and lipids in complex molecular systems, like LDL particles, in which the large apoB-100 is the main protein component.
Koivuniemi
Artturi
A
Wihuri Research Institute, Helsinki, Finland.
Kovanen
Petri T
PT
Hyvönen
Marja T
MT
D000473:Alkanes / Q000494:pharmacology*; D000595:Amino Acid Sequence; D000818:Animals; D053299:Apolipoprotein B-100 / Q000737:chemistry*; D003198:Computer Simulation; D004527:Egg Proteins / Q000737:chemistry* / Q000378:metabolism; D057927:Hydrophobic and Hydrophilic Interactions; D007700:Kinetics; D007798:Lampreys / Q000378:metabolism; D008954:Models, Biological; D008958:Models, Molecular; D008969:Molecular Sequence Data; D017433:Protein Structure, Secondary; D040681:Structural Homology, Protein; D014867:Water / Q000494:pharmacology*
D000473:Alkanes; D053299:Apolipoprotein B-100; D004527:Egg Proteins; D014867:Water; C001549:lipovitellin; C012867:decane