title: MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis.
abstract: We present MeV+R, an integration of the JAVA MultiExperiment Viewer program with Bioconductor packages. This integration of MultiExperiment Viewer and R is easily extensible to other R packages and provides users with point and click access to traditionally command line driven tools written in R. We demonstrate the ability to use MultiExperiment Viewer as a graphical user interface for Bioconductor applications in microarray data analysis by incorporating three Bioconductor packages, RAMA, BRIDGE and iterativeBMA.
authors.affiliation: Department of Microbiology, University of Washington, Seattle, WA 98195, USA. vudu@u.washington.edu
authors.forename: Vu T
authors.initials: VT
authors.lastname: Chu
authors.forename: Raphael
authors.initials: R
authors.lastname: Gottardo
authors.forename: Adrian E
authors.initials: AE
authors.lastname: Raftery
authors.forename: Roger E
authors.initials: RE
authors.lastname: Bumgarner
authors.forename: Ka Yee
authors.initials: KY
authors.lastname: Yeung
mesh_terms: D001499:Bayes Theorem; D003196:Computer Graphics; D020869:Gene Expression Profiling; D020411:Oligonucleotide Array Sequence Analysis; D012984:Software; D018511:Systems Integration; D014584:User-Computer Interface