title: Inflation of the edge of chaos in a simple model of gene interaction networks.
abstract: We study a set of linearized catalytic reactions to model gene and protein interactions. The model is based on experimentally motivated interaction network topologies and is designed to capture some key properties of gene expression statistics. We impose a nonlinearity to the system by enforcing a boundary condition which guarantees non-negative concentrations of chemical substances. System stability is quantified by maximum Lyapunov exponents. We find that the non-negativity constraint leads to a drastic inflation of those regions in parameter space where the Lyapunov exponent exactly vanishes. Within the model this finding can be fully explained as a result of a symmetry breaking mechanism induced by the positivity constraint. The robustness of this finding with respect to network topologies and the role of intrinsic molecular and external noise is discussed. We argue that systems with inflated "edges of chaos" could be much more easily favored by natural selection than systems where the Lyapunov exponent vanishes only on a parameter set of measure zero.
authors.affiliation: Complex Systems Research Group, HNO, Medical University of Vienna, Währinger Gürtel 18-20, Vienna, Austria.
authors.forename: Dejan
authors.initials: D
authors.lastname: Stokić
authors.forename: Rudolf
authors.initials: R
authors.lastname: Hanel
authors.forename: Stefan
authors.initials: S
authors.lastname: Thurner
mesh_terms: D001703:Biophysics / Q000379:methods; D002384:Catalysis; D003198:Computer Simulation; D005786:Gene Expression Regulation; D053263:Gene Regulatory Networks; D007700:Kinetics; D008957:Models, Genetic; D015233:Models, Statistical; D008962:Models, Theoretical; D017711:Nonlinear Dynamics; D016011:Normal Distribution; D025941:Protein Interaction Mapping; D012441:Saccharomyces cerevisiae / Q000235:genetics; D013269:Stochastic Processes; D049490:Systems Biology