title: The effect of alum addition on microbial communities in poultry litter.
abstract: Alum [Al(2)(SO(4))(3).14H(2)O] is a common poultry litter amendment used to decrease water-soluble phosphorus or reduce ammonia volatilization, or both. Although the physiochemical effects of alum addition have been well researched, little attention has been given to the poultry litter microbial communities. The goal of this study was to use molecular biological methods [denaturing gradient gel electrophoresis (DGGE), community cloning, and quantitative real-time PCR] to characterize general, group-specific and pathogenic microbial communities in alum (10% wt/wt) and non-alum-treated litter. According to quantitative real-time PCR analyses, alum addition to the poultry litter resulted in significant reductions in both Campylobacter jejuni and Escherichia coli concentrations by the end of the first month of the experiment (3 log and 2 log, respectively). The concentrations of Salmonella spp. were below detection (<5 x 10(3) cell.g(-1) of litter) for the entire experiment. The DGGE analyses revealed significant reductions in the Clostridium/Eubacterium and low %GC gram-positive groups in the alum-treated litters by the end of the first month, with no bands detectable for either group after 8 wk of incubation. Conversely, minimal effects of alum addition were observed in the Actinomycetes community. The most significant shift in the microbial community (based on DGGE analyses) occurred in the fungal population, with a large increase in diversity and abundance within 1 mo of alum addition (1 dominant band on d 0 to 9 dominant bands at 4 wk). Specifically, the incidence of Aspergillus spp. increased from 0 to 50% of the sequences in fungal clone libraries (n = 80) over the course of the experiment. This suggests that the addition of alum to poultry litter potentially shifts the microbial populations from bacterially dominated to dominated by fungi. The ramifications of this shift in dominance are still unknown, and future work will be aimed at characterizing these fungi and elucidating their role in the acidified litter environment.
authors.affiliation: USDA, Agricultural Research Service, Animal Waste Management Research Unit, Bowling Green, KY 42104, USA. michael.rothrock@ars.usda.gov
authors.forename: M J
authors.initials: MJ
authors.lastname: Rothrock
authors.forename: K L
authors.initials: KL
authors.lastname: Cook
authors.forename: J G
authors.initials: JG
authors.lastname: Warren
authors.forename: K
authors.initials: K
authors.lastname: Sistani
mesh_terms: D000534:Alum Compounds / Q000494:pharmacology*; D000822:Animal Husbandry / Q000379:methods*; D000818:Animals; D001419:Bacteria / Q000235:genetics / Q000302:isolation & purification*; D001483:Base Sequence; D002645:Chickens; D005658:Fungi / Q000235:genetics / Q000302:isolation & purification*; D008372:Manure / Q000382:microbiology*; D008969:Molecular Sequence Data; D012329:RNA, Bacterial / Q000737:chemistry / Q000235:genetics; D012331:RNA, Fungal / Q000737:chemistry / Q000235:genetics
chemical_list: D000534:Alum Compounds; D008372:Manure; D012329:RNA, Bacterial; D012331:RNA, Fungal; C041524:aluminum sulfate