Origins of enhanced proton transport in the Y7F mutant of human carbonic anhydrase II.
Human carbonic anhydrase II (HCA II), among the fastest enzymes known, catalyzes the reversible hydration of CO 2 to HCO 3 (-). The rate-limiting step of this reaction is believed to be the formation of an intramolecular water wire and transfer of a proton across the active site cavity from a zinc-bound solvent to a proton shuttling residue (His64). X-ray crystallographic studies have shown this intramolecular water wire to be directly stabilized through hydrogen bonds via a small well-defined set of amino acids, namely, Tyr7, Asn62, Asn67, Thr199, and Thr200. Furthermore, X-ray crystallographic and kinetic studies have shown that the mutation of tyrosine 7 to phenylalanine, Y7F HCA II, has the effect of increasing the proton transfer rate by 7-fold in the dehydration direction of the enzyme reaction compared to wild-type (WT). This increase in the proton transfer rate is postulated to be linked to the formation of a more directional, less branched, water wire. To evaluate this proposal, molecular dynamics simulations have been employed to study water wire formation in both the WT and Y7F HCA II mutant. These studies reveal that the Y7F mutant enhances the probability of forming small water wires and significantly extends the water wire lifetime, which may account for the elevated proton transfer seen in the Y7F mutant. Correlation analysis of the enzyme and intramolecular water wire indicates that the Y7F mutant significantly alters the interaction of the active site waters with the enzyme while occupancy data of the water oxygens reveals that the Y7F mutant stabilizes the intramolecular water wire in a manner that maximizes smaller water wire formation. This increase in the number of smaller water wires is likely to elevate the catalytic turnover of an already very efficient enzyme.
Maupin
C Mark
CM
Center for Biophysical Modeling and Simulation and the Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, USA.
Saunders
Marissa G
MG
Thorpe
Ian F
IF
McKenna
Robert
R
Silverman
David N
DN
Voth
Gregory A
GA
D019943:Amino Acid Substitution / Q000235:genetics*; D001639:Bicarbonates / Q000737:chemistry / Q000378:metabolism; D001665:Binding Sites; D002245:Carbon Dioxide / Q000737:chemistry / Q000378:metabolism; D024403:Carbonic Anhydrase III / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D002384:Catalysis; D003198:Computer Simulation; D018360:Crystallography, X-Ray; D006801:Humans; D006860:Hydrogen Bonding; D007700:Kinetics; D008958:Models, Molecular; D010649:Phenylalanine / Q000235:genetics*; D011522:Protons; D012997:Solvents / Q000737:chemistry; D014443:Tyrosine / Q000235:genetics*; D014867:Water / Q000737:chemistry; D015032:Zinc / Q000737:chemistry
D001639:Bicarbonates; D011522:Protons; D012997:Solvents; D014867:Water; D002245:Carbon Dioxide; D014443:Tyrosine; D010649:Phenylalanine; D024403:Carbonic Anhydrase III; D015032:Zinc