title: Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
abstract: Coxsackievirus A16 (CA16) is a major causative agent of hand, foot, and mouth disease (HFMD). It can cause myocarditis, pericarditis and fatal shock. There is no effective therapy against CA16. RNA interference (RNAi) is a powerful tool to silence gene expression. The small interfering RNA (siRNA) that induces RNA degradation has recently been used as an anti-virus agent to inhibit virus replication. In this study, we established the complete nucleotide sequence of CA16 strain Shzh05-1, and then compared the nucleotide sequences of Shzh05-1 with sequences of other CA16 strains in GenBank. We chose conserved regions between Shzh05-1 and the two other CA16 strains to design 30 siRNAs and construct siRNA-encoding plasmids. Thirteen siRNAs targeting conserved regions of the virus could effectively block replication of CA16 in cultured cells. Combination transfection of these 13 effective siRNAs could also produce a high inhibitory effect. These strategies and results suggest that RNAi has potential therapeutic use for suppression of CA16 infection.
authors.affiliation: State Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, Hubei 430072, PR China.
authors.forename: Zhiqiang
authors.initials: Z
authors.lastname: Wu
authors.forename: Yongzhen
authors.initials: Y
authors.lastname: Gao
authors.forename: Lilian
authors.initials: L
authors.lastname: Sun
authors.forename: Po
authors.initials: P
authors.lastname: Tien
authors.forename: Qi
authors.initials: Q
authors.lastname: Jin
mesh_terms: D000818:Animals; D002460:Cell Line; D002522:Chlorocebus aethiops; D004305:Dose-Response Relationship, Drug; D029822:Enterovirus B, Human / Q000235:genetics* / Q000378:metabolism; D015316:Genetic Therapy; D005822:Genetic Vectors / Q000235:genetics; D006232:Hand, Foot and Mouth Disease / Q000235:genetics* / Q000628:therapy* / Q000821:virology; D006801:Humans; D007963:Leukocytes, Mononuclear / Q000187:drug effects; D034622:RNA Interference; D034741:RNA, Small Interfering / Q000235:genetics*; D014709:Vero Cells; D014779:Virus Replication
chemical_list: D034741:RNA, Small Interfering