title: Quantitative analysis of circulating methylated DNA as a biomarker for hepatocellular carcinoma.
abstract: BACKGROUND
  Hypermethylation of the RASSF1A [Ras association (RalGDS/AF-6) domain family member 1A] gene is frequently observed in hepatocellular carcinoma (HCC). We evaluated the analysis of circulating hypermethylated RASSF1A for detecting HCC and assessing its prognosis.
  
  
  METHODS
  In module 1, we studied 63 pairs of HCC patients and age- and sex-matched chronic hepatitis B virus (HBV) carriers, as well as 50 healthy volunteers. In module 2, we studied 22 HCC patients with cancer detected through a surveillance program. The concentrations of circulating hypermethylated RASSF1A sequences were measured by real-time PCR after digestion with a methylation-sensitive restriction enzyme.
  
  
  RESULTS
  We detected hypermethylated RASSF1A sequences in the sera of 93% of HCC patients, 58% of HBV carriers, and 8% of the healthy volunteers. The median RASSF1A concentrations for the HCC patients and HBV carriers were 7.70 x 10(5) copies/L and 1.18 x 10(5) copies/L, respectively (P < 0.01). The detection of low concentrations in HBV carriers is consistent with previous findings that RASSF1A hypermethylation is an early event in HCC pathogenesis and can be found in premalignant liver tissues. Use of a marker cutoff value of 1 x 10(6) copies/L also identifies 50% of alpha-fetoprotein-negative HCC cases. Patients with higher RASSF1A concentrations at diagnosis or 1 year after tumor resection showed poorer disease-free survival (P < 0.01). For the HBV carriers who underwent HCC surveillance and subsequently developed HCC, the circulating concentration of RASSF1A increased significantly from the time of enrollment to cancer diagnosis (P = 0.014).
  
  
  CONCLUSIONS
  Detection and quantification of circulating methylated RASSF1A sequences are useful for HCC screening, detection, and prognostication.
authors.affiliation: State Key Laboratory in Oncology in South China, Sir Y. K. Pao Centre for Cancer, Department of Chemical Pathology, The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, Hong Kong, China.
authors.forename: K C Allen
authors.initials: KC
authors.lastname: Chan
authors.forename: Paul B S
authors.initials: PB
authors.lastname: Lai
authors.forename: Tony S K
authors.initials: TS
authors.lastname: Mok
authors.forename: Henry L Y
authors.initials: HL
authors.lastname: Chan
authors.forename: Chunming
authors.initials: C
authors.lastname: Ding
authors.forename: S W
authors.initials: SW
authors.lastname: Yeung
authors.forename: Y M Dennis
authors.initials: YM
authors.lastname: Lo
mesh_terms: D001483:Base Sequence; D014408:Biomarkers, Tumor / Q000097:blood / Q000235:genetics*; D006528:Carcinoma, Hepatocellular / Q000097:blood / Q000209:etiology / Q000235:genetics* / Q000601:surgery; D019175:DNA Methylation; D004270:DNA, Circular / Q000032:analysis* / Q000235:genetics*; D018572:Disease-Free Survival; D005260:Female; D006509:Hepatitis B / Q000097:blood / Q000150:complications / Q000235:genetics; D006515:Hepatitis B virus / Q000502:physiology; D006801:Humans; D008103:Liver Cirrhosis / Q000097:blood / Q000235:genetics; D008297:Male; D008875:Middle Aged; D013997:Time Factors; D025521:Tumor Suppressor Proteins / Q000097:blood; D000509:alpha-Fetoproteins / Q000378:metabolism
chemical_list: C097353:AFP protein, human; D014408:Biomarkers, Tumor; D004270:DNA, Circular; C411762:RASSF1 protein, human; D025521:Tumor Suppressor Proteins; D000509:alpha-Fetoproteins