Arabidopsis thaliana regulatory element analyzer.
In the Arabidopsis thaliana regulatory element analyzer (AtREA) server, we have integrated sequence data, genome-wide expression data and functional annotation data in three application modules which will be useful to identify major regulatory targets of a user-provided cis-regulatory element (CRE), study different features of CRE distribution and evaluate the role of a set of CREs in the regulation of gene expression--independently as well as in combination with other user-provided CREs.


BACKGROUND
AtREA is freely available at http://www.bioinformatics.org/grn/atrea.html.
Choudhury
Ananyo
A
Department of Biophysics, Molecular Biology and Genetics, University of Calcutta, 92 APC Road, Kolkata 700009, India. ananyo.c@gmail.com
Lahiri
Ansuman
A
D017360:Arabidopsis / Q000235:genetics*; D019295:Computational Biology; D018506:Gene Expression Regulation, Plant; D018745:Genome, Plant; D011401:Promoter Regions, Genetic; D012045:Regulatory Sequences, Nucleic Acid