title: Archaeal diversity in acid mine drainage from Dabaoshan Mine, China.
abstract: Three acid mine drainage (AMD) samples collected from Dabaoshan Mine (Guangdong Province, China) were studied. In addition to physicochemical analyses, the diversity and community structures of the archaeal communities in these samples were described at the genetic level by amplified ribosomal DNA restriction analysis (ARDRA). Nine different ARDRA patterns were obtained from 146 clones and were studied as operational taxonomic units (OTUs), which were re-amplified and sequenced. Sequence data and phylogenetic analysis showed that most of the clones belonged to the Thermoplasmatales, and that archaea belonging to the Sulfolobales were absent. Only 1 OTU attributed to Ferroplasma was found and was observed to be abundant in all 3 samples. Eight OTUs were related to 2 new undefined groups in the Thermoplasmatales. Of the 8 OTUs, the clones in 2 similar units were isolated from samples collected from an abandoned sulfide mine (Huelva, Spain) and those in 5 similar units were isolated from samples collected from a closed copper mine (Tonglushan, China). These diversities were characterized by the reciprocal of Simpson's index (1/D) and correlated with the concentrations of ferrous ions and toxic ions in the AMD samples. The high temperature of the sampling sites was one of the factors that could explain why archaea belonging to the Thermoplasmatales were abundant in the analyzed AMD samples while those belonging to the Sulfolobales were absent.
authors.affiliation: School of Minerals Processing and Bioengineering, Central South University, Changsha, Hunan, China.
authors.forename: Guan-Zhou
authors.initials: GZ
authors.lastname: Qiu
authors.forename: Min-Xi
authors.initials: MX
authors.lastname: Wan
authors.forename: Lin
authors.initials: L
authors.lastname: Qian
authors.forename: Zhi-Ying
authors.initials: ZY
authors.lastname: Huang
authors.forename: Kai
authors.initials: K
authors.lastname: Liu
authors.forename: Xue-Duan
authors.initials: XD
authors.lastname: Liu
authors.forename: Wu-Yang
authors.initials: WY
authors.lastname: Shi
authors.forename: Yu
authors.initials: Y
authors.lastname: Yang
mesh_terms: D001105:Archaea / Q000145:classification* / Q000235:genetics; D044822:Biodiversity; D002681:China; D019641:DNA, Archaeal / Q000235:genetics; D004275:DNA, Ribosomal / Q000235:genetics; D004463:Ecology; D008906:Mining; D008954:Models, Biological; D008969:Molecular Sequence Data; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D014871:Water Microbiology
chemical_list: D019641:DNA, Archaeal; D004275:DNA, Ribosomal; D012336:RNA, Ribosomal, 16S