title: Genetics of drought adaptation in Arabidopsis thaliana II. QTL analysis of a new mapping population, KAS-1 x TSU-1.
abstract: Despite compelling evidence that adaptation to local climate is common in plant populations, little is known about the evolutionary genetics of traits that contribute to climatic adaptation. A screen of natural accessions of Arabidopsis thaliana revealed Tsu-1 and Kas-1 to be opposite extremes for water-use efficiency and climate at collection sites for these accessions differs greatly. To provide a tool to understand the genetic basis of this putative adaptation, Kas-1 and Tsu-1 were reciprocally crossed to create a new mapping population. Analysis of F(3) families showed segregating variation in both delta(13)C and transpiration rate, and as expected these traits had a negative genetic correlation (r(g)=- 0.3). 346 RILs, 148 with Kas-1 cytoplasm and 198 with Tsu-1 cytoplasm, were advanced to the F(9) and genotyped using 48 microsatellites and 55 SNPs for a total of 103 markers. This mapping population was used for QTL analysis of delta(13)C using F(9) RIL means. Analysis of this reciprocal cross showed a large effect of cytoplasmic background, as well as two QTL for delta(13)C. The Kas-1 x Tsu-1 mapping population provides a powerful new resource for mapping QTL underlying natural variation and for dissecting the genetic basis of water-use efficiency differences.
authors.affiliation: Department of Bioagricultural Sciences, Graduate Degree Program in Ecology, Colorado State University, Fort Collins, Colorado 80523, USA. jkmckay@colostate.edu
authors.forename: John K
authors.initials: JK
authors.lastname: McKay
authors.forename: James H
authors.initials: JH
authors.lastname: Richards
authors.forename: Krishna S
authors.initials: KS
authors.lastname: Nemali
authors.forename: Saunak
authors.initials: S
authors.lastname: Sen
authors.forename: Thomas
authors.initials: T
authors.lastname: Mitchell-Olds
authors.forename: Sandra
authors.initials: S
authors.lastname: Boles
authors.forename: Eli A
authors.initials: EA
authors.lastname: Stahl
authors.forename: Tierney
authors.initials: T
authors.lastname: Wayne
authors.forename: Thomas E
authors.initials: TE
authors.lastname: Juenger
mesh_terms: D000220:Adaptation, Biological / Q000235:genetics* / Q000502:physiology; D000704:Analysis of Variance; D017360:Arabidopsis / Q000235:genetics*; D003433:Crosses, Genetic; D055864:Droughts; D005819:Genetic Markers / Q000235:genetics; D005838:Genotype; D018895:Microsatellite Repeats / Q000235:genetics; D020641:Polymorphism, Single Nucleotide / Q000235:genetics; D040641:Quantitative Trait Loci; D013045:Species Specificity
chemical_list: D005819:Genetic Markers