title: MPSQ: a web tool for protein-state searching.
abstract: MPSQ (multi-protein-states query) is a web-based tool for the discovery of protein states (e.g. biological interactions, covalent modifications, cellular localizations). In particular, large sets of genes can be used to search for enriched state transition network maps (NMs) and features facilitating the interpretation of genomic-scale experiments such as microarrays. One NM collects all the catalogued states of a protein as well as the mutual transitions between the states. For the returned NM, graph visualization is provided for easy understanding and to guide further analysis.
authors.affiliation: Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China.
authors.forename: Siyuan
authors.initials: S
authors.lastname: Zheng
authors.forename: Jia
authors.initials: J
authors.lastname: Sheng
authors.forename: Chuan
authors.initials: C
authors.lastname: Wang
authors.forename: Xiaojing
authors.initials: X
authors.lastname: Wang
authors.forename: Yao
authors.initials: Y
authors.lastname: Yu
authors.forename: Yun
authors.initials: Y
authors.lastname: Li
authors.forename: Alex
authors.initials: A
authors.lastname: Michie
authors.forename: Jianliang
authors.initials: J
authors.lastname: Dai
authors.forename: Yang
authors.initials: Y
authors.lastname: Zhong
authors.forename: Pei
authors.initials: P
authors.lastname: Hao
authors.forename: Lei
authors.initials: L
authors.lastname: Liu
authors.forename: Yixue
authors.initials: Y
authors.lastname: Li
mesh_terms: D030562:Databases, Protein; D025941:Protein Interaction Mapping; D011506:Proteins / Q000032:analysis / Q000737:chemistry* / Q000378:metabolism; D012984:Software; D014584:User-Computer Interface
chemical_list: D011506:Proteins