title: Whole-genome transcriptional profiling of Bradyrhizobium japonicum during chemoautotrophic growth.
abstract: Bradyrhizobium japonicum is a facultative chemoautotroph capable of utilizing hydrogen gas as an electron donor in a respiratory chain terminated by oxygen to provide energy for cellular processes and carbon dioxide assimilation via a reductive pentose phosphate pathway. A transcriptomic analysis of B. japonicum cultured chemoautotrophically identified 1,485 transcripts, representing 17.5% of the genome, as differentially expressed when compared to heterotrophic cultures. Genetic determinants required for hydrogen utilization and carbon fixation, including the uptake hydrogenase system and components of the Calvin-Benson-Bassham cycle, were strongly induced in chemoautotrophically cultured cells. A putative isocitrate lyase (aceA; blr2455) was among the most strongly upregulated genes, suggesting a role for the glyoxylate cycle during chemoautotrophic growth. Addition of arabinose to chemoautotrophic cultures of B. japonicum did not significantly alter transcript profiles. Furthermore, a subset of nitrogen fixation genes was moderately induced during chemoautotrophic growth. In order to specifically address the role of isocitrate lyase and nitrogenase in chemoautotrophic growth, we cultured aceA, nifD, and nifH mutants under chemoautotrophic conditions. Growth of each mutant was similar to that of the wild type, indicating that the glyoxylate bypass and nitrogenase activity are not essential components of chemoautotrophy in B. japonicum.
authors.affiliation: National Center for Soybean Biotechnology, Division of Plant Sciences, University of Missouri, Columbia, Missouri 65211, USA.
authors.forename: William L
authors.initials: WL
authors.lastname: Franck
authors.forename: Woo-Suk
authors.initials: WS
authors.lastname: Chang
authors.forename: Jing
authors.initials: J
authors.lastname: Qiu
authors.forename: Masayuki
authors.initials: M
authors.lastname: Sugawara
authors.forename: Michael J
authors.initials: MJ
authors.lastname: Sadowsky
authors.forename: Stephanie A
authors.initials: SA
authors.lastname: Smith
authors.forename: Gary
authors.initials: G
authors.lastname: Stacey
mesh_terms: D001426:Bacterial Proteins / Q000096:biosynthesis* / Q000235:genetics; D020369:Bradyrhizobium / Q000235:genetics / Q000502:physiology*; D052837:Chemoautotrophic Growth; D015536:Down-Regulation; D017353:Gene Deletion; D020869:Gene Expression Profiling; D005798:Genes, Bacterial; D053858:Metabolic Networks and Pathways; D020411:Oligonucleotide Array Sequence Analysis; D015854:Up-Regulation
chemical_list: D001426:Bacterial Proteins