title: A toolkit for analysing large-scale plant small RNA datasets.
abstract: Recent developments in high-throughput sequencing technologies have generated considerable demand for tools to analyse large datasets of small RNA sequences. Here, we describe a suite of web-based tools for processing plant small RNA datasets. Our tools can be used to identify micro RNAs and their targets, compare expression levels in sRNA loci, and find putative trans-acting siRNA loci.
  
  
  BACKGROUND
  The tools are freely available for use at http://srna-tools.cmp.uea.ac.uk.
authors: School of Computing Sciences, School of Biological Sciences, University of East Anglia, Norwich NR47TJ, UK.
authors: Simon
authors: S
authors: Moxon
authors: Frank
authors: F
authors: Schwach
authors: Tamas
authors: T
authors: Dalmay
authors: Dan
authors: D
authors: Maclean
authors: David J
authors: DJ
authors: Studholme
authors: Vincent
authors: V
authors: Moulton
mesh_terms: D019295:Computational Biology / Q000379:methods; D030561:Databases, Nucleic Acid; D035683:MicroRNAs / Q000235:genetics* / Q000378:metabolism; D018749:RNA, Plant / Q000235:genetics* / Q000378:metabolism; D012984:Software
chemical_list: D035683:MicroRNAs; D018749:RNA, Plant