title: [Molecular cloning and heterologous expression of a new xylanase gene from Verticillium dahliae].
abstract: OBJECTIVE
  Fungus Verticillium dahliae caused greensickness of cotton and xylanase is necessary in this pathogenesis. Cloning xylanase gene from V. dahliae and heterologous expression might obtain new xylanase.
  
  
  METHODS
  By comparing the amino acid sequences of over 10 xylanases in 11 families from fungi through BLAST, we found 2 highly conserved regions, with a fragment of about 150 amino acids coding sequence in between. Degenerate primers complementary to the ends of these two conserved regions were designed to amplify the in-between sequence from V. dahliae. The whole xylanse gene containing intron was achieved by Genome-walking PCR method. A 63 bp intron was found through BLAST, the whole cDNA xynG was cloned by Dpn I -mediated PCR to delete intron. The cDNA was inserted into pHBM905 and expressed in Pichia pastoris GS115, xylanase-secreting transformants were selected on plate containing RBB-xylan. The transformant with the largest halos was selected for study the character of xylanase.
  
  
  RESULTS
  The deduced amino acid sequence showed 72% identity with endo-beta-1, 4-xylanase from Cochliobolus carbonum and C. sativus in the GenBank, which means xynG is a new xylanase gene. The optimal pH of the purified recombinant enzyme was pH6. It remains over 50% relative activity at pH5-9. The optimal temperature was 45 degrees C. The most favorable substrate for the xylanase (XYNG) is Beechwood xylan. Mg2+ and Ca2+ improve the enzyme activity by 33.7% and 16.6%, respectively. EDTA, beta-Mercaptoethanol and NaN3 don't affect the enzyme activity. Tween-80 and DMSO activated enzyme activity by 28.4% and 12.8%. Hg+, in concentration of 5 mmol/L, also inhibited the enzyme activity.
  
  
  CONCLUSIONS
  The xylanase gene xynG was firstly cloned from the fungi that caused greensickness of cotton. The xylanase genes containing one intron can be efficiently cloned from plant pathogens and white-rot fungi using strategy in this research. It is unnecessary to explore enzyme expression condition and measure enzyme activity of the original strain. Enzyme character analysis showed that the XynG have potential application in the production of xylo-oligosaccharide and the improvement of bread quality.
authors: College of Life Science, Hubei University, Wuhan 430062, China. zhangguimin@hubu.edu.cn
authors: Guimin
authors: G
authors: Zhang
authors: Ben
authors: B
authors: Rao
authors: Jian
authors: J
authors: Ye
authors: Lixin
authors: L
authors: Ma
authors: Xian'en
authors: X
authors: Zhang
mesh_terms: D000595:Amino Acid Sequence; D003001:Cloning, Molecular; D017124:Conserved Sequence; D018076:DNA, Complementary / Q000235:genetics; D015870:Gene Expression; D003368:Gossypium / Q000382:microbiology; D006863:Hydrogen-Ion Concentration; D008670:Metals / Q000494:pharmacology; D008969:Molecular Sequence Data; D010843:Pichia / Q000235:genetics; D010935:Plant Diseases / Q000382:microbiology; D016133:Polymerase Chain Reaction; D017422:Sequence Analysis, DNA; D013696:Temperature; D020172:Verticillium / Q000235:genetics*; D014995:Xylosidases / Q000096:biosynthesis / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism
chemical_list: D018076:DNA, Complementary; D008670:Metals; D014995:Xylosidases