title: Adaptive evolution of UGT2B17 copy-number variation.
abstract: The human UGT2B17 gene varies in copy number from zero to two per individual and also differs in mean number between populations from Africa, Europe, and East Asia. We show that such a high degree of geographical variation is unusual and investigate its evolutionary history. This required first reinterpreting the reference sequence in this region of the genome, which is misassembled from the two different alleles separated by an artifactual gap. A corrected assembly identifies the polymorphism as a 117 kb deletion arising by nonallelic homologous recombination between approximately 4.9 kb segmental duplications and allows the deletion breakpoint to be identified. We resequenced approximately 12 kb of DNA spanning the breakpoint in 91 humans from three HapMap and one extended HapMap populations and one chimpanzee. Diversity was unusually high and the time to the most recent common ancestor was estimated at approximately 2.4 or approximately 3.0 million years by two different methods, with evidence of balancing selection in Europe. In contrast, diversity was low in East Asia where a single haplotype predominated, suggesting positive selection for the deletion in this part of the world.
authors.affiliation: The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK.
authors.forename: Yali
authors.initials: Y
authors.lastname: Xue
authors.forename: Donglin
authors.initials: D
authors.lastname: Sun
authors.forename: Allan
authors.initials: A
authors.lastname: Daly
authors.forename: Fengtang
authors.initials: F
authors.lastname: Yang
authors.forename: Xue
authors.initials: X
authors.lastname: Zhou
authors.forename: Mengyao
authors.initials: M
authors.lastname: Zhao
authors.forename: Ni
authors.initials: N
authors.lastname: Huang
authors.forename: Tatiana
authors.initials: T
authors.lastname: Zerjal
authors.forename: Charles
authors.initials: C
authors.lastname: Lee
authors.forename: Nigel P
authors.initials: NP
authors.lastname: Carter
authors.forename: Matthew E
authors.initials: ME
authors.lastname: Hurles
authors.forename: Chris
authors.initials: C
authors.lastname: Tyler-Smith