MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis.
MS-BID (MS Biomarker Discovery Platform) is an integrative computational pipeline for biomarker discovery using LC-MS-based comparative proteomic analysis. This platform consists of several computational tools for: (i) detecting peptides in the collected patterns; (ii) matching detected peptides across a number of LC-MS datasets and (iii) selecting discriminatory peptides between classes of samples.


BACKGROUND
MS-BID source codes, binaries and documentations are freely available under LGPL from http://tools.proteomecenter.org/msBID.php.
Hwang
Daehee
D
Institute for Systems Biology, Seattle, WA 98103, USA. dhhwang@postech.ac.kr
Zhang
Ning
N
Lee
Hookeun
H
Yi
Eugene
E
Zhang
Hui
H
Lee
Inyoul Y
IY
Hood
Leroy
L
Aebersold
Ruedi
R
D002853:Chromatography, Liquid / Q000379:methods*; D019295:Computational Biology; D013058:Mass Spectrometry / Q000379:methods*; D040901:Proteomics / Q000379:methods*; D012984:Software