Amino acid contacts in proteins adapted to different temperatures: hydrophobic interactions and surface charges play a key role.
Thermophiles, mesophiles, and psychrophiles have different amino acid frequencies in their proteins, probably because of the way the species adapt to very different temperatures in their environment. In this paper, we analyse how contacts between sidechains vary between homologous proteins from species that are adapted to different temperatures, but displaying relatively high sequence similarity. We investigate whether specific contacts between amino acids sidechains is a key factor in thermostabilisation in proteins. The dataset was divided into two subsets with optimal growth temperatures from 0-40 and 35-102 degrees C. Comparison of homologues was made between low-temperature species and high-temperature species within each subset. We found that unspecific interactions like hydrophobic interactions in the core and solvent interactions and entropic effects at the surface, appear to be more important factors than specific contact types like salt bridges and aromatic clusters.
Saelensminde
Gisle
G
Computational Biology Unit, BCCS, University of Bergen, Bergen, Norway. gisle@cbu.uib.no
Halskau
Øyvind
Ø
Jonassen
Inge
I
D000596:Amino Acids / Q000737:chemistry*; D003080:Cold Temperature; D006358:Hot Temperature; D011506:Proteins / Q000737:chemistry* / Q000502:physiology; D013499:Surface Properties
D000596:Amino Acids; D011506:Proteins