title: Taxonomy and phylogeny of new wood- and soil-inhabiting Sporothrix species in the Ophiostoma stenoceras-Sporothrix schenckii complex.
abstract: Sporothrix, one of the anamorph genera of Ophiostoma, includes the important human pathogen S. schenckii and various fungi associated with insects and sap stain of wood. A survey of fungi from wood utility poles in South Africa yielded two distinct groups of Sporothrix isolates from different geographical areas. DNA sequence and morphological data derived in this study showed that isolates in these groups represent two novel species in the S. schenckii-O. stenoceras species complex. A new species isolated from pine poles and rosebush wood and phylogenetically closely related to S. pallida is described here as Sporothrix stylites. Phylogenetic analyses also confirmed the synonymy of S. albicans and S. nivea with S. pallida. Sporothrix stylites and S. pallida also are related closely to the isolates from soil, previously treated as "environmental" isolates of S. schenckii. Soil isolates are clearly distinct from human isolates of S. schenckii. We describe the former here as Sporothrix humicola. The isolates from eucalypt poles group peripheral to most other species in the S. schenckii-O. stenoceras complex and are newly described as Sporothrix lignivora. Phylogenetic analyses of sequences of isolates from soil and wood together with those of clinical isolates showed that the human-pathogenic strains form an aggregate of several cryptic species.
authors.affiliation: Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, 0002, South Africa. elsie.demeyer@fabi.up.ac.za
authors.forename: Elsie M
authors.initials: EM
authors.lastname: de Meyer
authors.forename: Z Wilhelm
authors.initials: ZW
authors.lastname: de Beer
authors.forename: Richard C
authors.initials: RC
authors.lastname: Summerbell
authors.forename: A M
authors.initials: AM
authors.lastname: Moharram
authors.forename: G Sybren
authors.initials: GS
authors.lastname: de Hoog
authors.forename: Hester F
authors.initials: HF
authors.lastname: Vismer
authors.forename: Michael J
authors.initials: MJ
authors.lastname: Wingfield
mesh_terms: D006801:Humans; D008969:Molecular Sequence Data; D010802:Phylogeny; D012150:Polymorphism, Restriction Fragment Length; D012988:Soil Microbiology; D013019:South Africa; D013175:Sporothrix / Q000145:classification* / Q000166:cytology / Q000235:genetics / Q000302:isolation & purification*; D013174:Sporotrichosis / Q000382:microbiology*; D014934:Wood / Q000382:microbiology*