InSatDb: a genomic tool for insect geneticists.
Microsatellites show tremendous variation between genomes in terms of their occurrence and composition. Availability of whole genome sequences allows us to study microsatellite characteristics of fully sequenced insect genomes to understand the evolution and biological significance of microsatellites. InSatDb is an insect microsatellite database that provides an interactive interface to query information on microsatellites annotated with size (in base pairs and repeat units), genomic location (exon, intron, up-stream or transposon), nature (perfect or imperfect), and sequence composition (repeat motif and GC%). Here we present a snapshot of the distribution and composition of microsatellites in introns and exons of insect genomes. The data present interesting observations regarding the microsatellite life-cycle and genome flux.
Centre of Excellence for Genetics and Genomics of Silkmoths, Laboratory of Molecular Genetics, Centre for DNA Fingerprinting and Diagnostics, Hyderabad, India.
Sunil
S
Archak
Javaregowda
J
Nagaraju
D000818:Animals; D030541:Databases, Genetic; D005091:Exons; D049750:Genome, Insect; D023281:Genomics / Q000706:statistics & numerical data; D007313:Insecta / Q000235:genetics*; D007438:Introns; D018895:Microsatellite Repeats; D018911:Trinucleotide Repeats