AthaMap, integrating transcriptional and post-transcriptional data.
The AthaMap database generates a map of predicted transcription factor binding sites (TFBS) for the whole Arabidopsis thaliana genome. AthaMap has now been extended to include data on post-transcriptional regulation. A total of 403,173 genomic positions of small RNAs have been mapped in the A. thaliana genome. These identify 5772 putative post-transcriptionally regulated target genes. AthaMap tools have been modified to improve the identification of common TFBS in co-regulated genes by subtracting post-transcriptionally regulated genes from such analyses. Furthermore, AthaMap was updated to the TAIR7 genome annotation, a graphic display of gene analysis results was implemented, and the TFBS data content was increased. AthaMap is freely available at http://www.athamap.de/.
Bülow
Lorenz
L
Institut für Genetik,Technische Universität Braunschweig, Spielmannstr. 7, D-38106 Braunschweig, Germany.
Engelmann
Stefan
S
Schindler
Martin
M
Hehl
Reinhard
R
D017360:Arabidopsis / Q000235:genetics* / Q000378:metabolism; D001665:Binding Sites; D003196:Computer Graphics; D030541:Databases, Genetic; D018506:Gene Expression Regulation, Plant; D023281:Genomics; D022661:RNA, Untranslated / Q000378:metabolism*; D018511:Systems Integration; D014157:Transcription Factors / Q000235:genetics*; D014158:Transcription, Genetic
D022661:RNA, Untranslated; D014157:Transcription Factors