title: Evolutionary redefinition of immunoglobulin light chain isotypes in tetrapods using molecular markers.
abstract: The phylogenetic relationships of Ig light chain (IGL) genes are difficult to resolve, because these genes are short and evolve relatively fast. Here, we classify the IGL sequences from 12 tetrapod species into three distinct groups (kappa, lambda, and sigma isotypes) using conserved amino acid residues, recombination signal sequences, and genomic organization of IGL genes as cladistic markers. From the distribution of the markers we conclude that the earliest extant tetrapods, the amphibians, possess three IGL isotypes: kappa, lambda, and sigma. Of these, two (kappa and lambda) are also found in reptiles and some mammals. The lambda isotype is found in all tetrapods tested to date, whereas the kappa isotype seems to have been lost at least in some birds and in the microbat. Conservation of the cladistic molecular markers suggests that they are associated with functional specialization of the three IGL isotypes. The genomic maps of IGL loci reveal multiple gene rearrangements that occurred in the evolution of tetrapod species. These rearrangements have resulted in interspecific variation of the genomic lengths of the IGL loci and the number and order of IGL constituent genes, but the overall organization of the IGL loci has not changed.
authors.affiliation: Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University, University Park, PA 16802, USA.
authors.forename: Sabyasachi
authors.initials: S
authors.lastname: Das
authors.forename: Nikolas
authors.initials: N
authors.lastname: Nikolaidis
authors.forename: Jan
authors.initials: J
authors.lastname: Klein
authors.forename: Masatoshi
authors.initials: M
authors.lastname: Nei
mesh_terms: D000595:Amino Acid Sequence; D000663:Amphibians; D000818:Animals; D015415:Biomarkers; D019143:Evolution, Molecular; D015321:Gene Rearrangement; D023281:Genomics; D007147:Immunoglobulin Light Chains / Q000145:classification / Q000235:genetics*; D054444:Immunoglobulin Light Chains, Surrogate / Q000235:genetics; D007145:Immunoglobulin kappa-Chains / Q000235:genetics; D007146:Immunoglobulin lambda-Chains / Q000235:genetics; D008322:Mammals; D010802:Phylogeny; D012104:Reptiles; D014714:Vertebrates
chemical_list: D015415:Biomarkers; D007147:Immunoglobulin Light Chains; D054444:Immunoglobulin Light Chains, Surrogate; D007145:Immunoglobulin kappa-Chains; D007146:Immunoglobulin lambda-Chains