PEDANT covers all complete RefSeq genomes.
The PEDANT genome database provides exhaustive annotation of nearly 3000 publicly available eukaryotic, eubacterial, archaeal and viral genomes with more than 4.5 million proteins by a broad set of bioinformatics algorithms. In particular, all completely sequenced genomes from the NCBI's Reference Sequence collection (RefSeq) are covered. The PEDANT processing pipeline has been sped up by an order of magnitude through the utilization of precalculated similarity information stored in the similarity matrix of proteins (SIMAP) database, making it possible to process newly sequenced genomes immediately as they become available. PEDANT is freely accessible to academic users at http://pedant.gsf.de. For programmatic access Web Services are available at http://pedant.gsf.de/webservices.jsp.
Walter
Mathias C
MC
Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum München, German Research Center for Environmental Health (GmbH), Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.
Rattei
Thomas
T
Arnold
Roland
R
Güldener
Ulrich
U
Münsterkötter
Martin
M
Nenova
Karamfilka
K
Kastenmüller
Gabi
G
Tischler
Patrick
P
Wölling
Andreas
A
Volz
Andreas
A
Pongratz
Norbert
N
Jost
Ralf
R
Mewes
Hans-Werner
HW
Frishman
Dmitrij
D
D030541:Databases, Genetic; D016678:Genome; D023281:Genomics; D020407:Internet; D011506:Proteins / Q000235:genetics*
D011506:Proteins