title: Quality control despite mistranslation caused by an ambiguous genetic code.
abstract: A high level of accuracy during protein synthesis is considered essential for life. Aminoacyl-tRNA synthetases (aaRSs) translate the genetic code by ensuring the correct pairing of amino acids with their cognate tRNAs. Because some aaRSs also produce misacylated aminoacyl-tRNA (aa-tRNA) in vivo, we addressed the question of protein quality within the context of missense suppression by Cys-tRNA(Pro), Ser-tRNA(Thr), Glu-tRNA(Gln), and Asp-tRNA(Asn). Suppression of an active-site missense mutation leads to a mixture of inactive mutant protein (from translation with correctly acylated aa-tRNA) and active enzyme indistinguishable from the wild-type protein (from translation with misacylated aa-tRNA). Here, we provide genetic and biochemical evidence that under selective pressure, Escherichia coli not only tolerates the presence of misacylated aa-tRNA, but can even require it for growth. Furthermore, by using mass spectrometry of a reporter protein not subject to selection, we show that E. coli can survive the ambiguous genetic code imposed by misacylated aa-tRNA tolerating up to 10% of mismade protein. The editing function of aaRSs to hydrolyze misacylated aa-tRNA is not essential for survival, and the EF-Tu barrier against misacylated aa-tRNA is not absolute. Rather, E. coli copes with mistranslation by triggering the heat shock response that stimulates nonoptimized polypeptides to achieve a native conformation or to be degraded. In this way, E. coli ensures the presence of sufficient functional protein albeit at a considerable energetic cost.
authors.affiliation: Departments of Molecular Biophysics and Biochemistry, and Chemistry, Yale University, New Haven, CT 06520-8114, USA.
authors.forename: Benfang
authors.initials: B
authors.lastname: Ruan
authors.forename: Sotiria
authors.initials: S
authors.lastname: Palioura
authors.forename: Jeffrey
authors.initials: J
authors.lastname: Sabina
authors.forename: Laure
authors.initials: L
authors.lastname: Marvin-Guy
authors.forename: Sunil
authors.initials: S
authors.lastname: Kochhar
authors.forename: Robert A
authors.initials: RA
authors.lastname: Larossa
authors.forename: Dieter
authors.initials: D
authors.lastname: Söll
mesh_terms: D004926:Escherichia coli / Q000235:genetics; D005815:Genetic Code; D018869:Heat-Shock Response / Q000502:physiology; D013058:Mass Spectrometry; D020125:Mutation, Missense; D014176:Protein Biosynthesis; D012346:RNA, Transfer, Amino Acyl / Q000502:physiology
chemical_list: D012346:RNA, Transfer, Amino Acyl