title: Update of KDBI: Kinetic Data of Bio-molecular Interaction database.
abstract: Knowledge of the kinetics of biomolecular interactions is important for facilitating the study of cellular processes and underlying molecular events, and is essential for quantitative study and simulation of biological systems. Kinetic Data of Bio-molecular Interaction database (KDBI) has been developed to provide information about experimentally determined kinetic data of protein-protein, protein-nucleic acid, protein-ligand, nucleic acid-ligand binding or reaction events described in the literature. To accommodate increasing demand for studying and simulating biological systems, numerous improvements and updates have been made to KDBI, including new ways to access data by pathway and molecule names, data file in System Biology Markup Language format, more efficient search engine, access to published parameter sets of simulation models of 63 pathways, and 2.3-fold increase of data (19,263 entries of 10,532 distinctive biomolecular binding and 11,954 interaction events, involving 2635 proteins/protein complexes, 847 nucleic acids, 1603 small molecules and 45 multi-step processes). KDBI is publically available at http://bidd.nus.edu.sg/group/kdbi/kdbi.asp.
authors.affiliation: Bioinformatics and Drug Design Group, Centre for Computational Science and Engineering, National University of Singapore, Blk S16, Level 8, 3 Science Drive 2, Singapore 117543.
authors.forename: Pankaj
authors.initials: P
authors.lastname: Kumar
authors.forename: B C
authors.initials: BC
authors.lastname: Han
authors.forename: Z
authors.initials: Z
authors.lastname: Shi
authors.forename: J
authors.initials: J
authors.lastname: Jia
authors.forename: Y P
authors.initials: YP
authors.lastname: Wang
authors.forename: Y T
authors.initials: YT
authors.lastname: Zhang
authors.forename: L
authors.initials: L
authors.lastname: Liang
authors.forename: Q F
authors.initials: QF
authors.lastname: Liu
authors.forename: Z L
authors.initials: ZL
authors.lastname: Ji
authors.forename: Y Z
authors.initials: YZ
authors.lastname: Chen
mesh_terms: D003198:Computer Simulation; D030541:Databases, Genetic; D007700:Kinetics; D008024:Ligands; D046912:Multiprotein Complexes / Q000737:chemistry / Q000378:metabolism*; D009696:Nucleic Acids / Q000737:chemistry / Q000378:metabolism*; D025941:Protein Interaction Mapping; D012984:Software
chemical_list: D008024:Ligands; D046912:Multiprotein Complexes; D009696:Nucleic Acids