Conformational dynamics of minimal elastin-like polypeptides: the role of proline revealed by molecular dynamics and nuclear magnetic resonance.
Previous molecular dynamics studies of the elastin-like peptide (ELP) GVG(VPGVG) predict that this ELP undergoes a conformational transition from an open to a more compact closed state upon an increase in temperature. These structural changes occurring in this minimal elastin model at the so-called inverse temperature transition (ITT), which takes place when elastin is heated to temperatures of about 20-40 (omicron)C, are investigated further in this work by means of a combined theoretical and experimental approach. To do this, additional extensive classical molecular dynamics (MD) simulations of the capped octapeptide are carried out, analyzed, and compared to data obtained from homonuclear magnetic resonance (NMR) spectroscopy of the same octapeptide. Moreover, in the previous simulations, the proline residue in the ELP is found to act as a hinge, thereby allowing for the large-amplitude opening and closing conformational motion of the ITT. To explore the role of proline in such elastin repeating units, a point mutant (P5I), which replaces the proline residue with an isoleucine residue, is also investigated using the aforementioned theoretical and experimental techniques. The results show that the site-directed mutation completely alters the properties of this ELP, thus confirming the importance of the highly conserved proline residue in the ITT. Furthermore, a correlation between the two different methods employed is seen. Both methods predict the mutant ELP to be present in an unstructured form and the wild type ELP to have a beta-turn-like structure. Finally, the role of the peptidyl cis to trans isomerization of the proline hinge is assessed in detail.
Glaves
Rachel
R
Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, 44780 Bochum, Germany. Rachel.Glaves@theochem.ruhr-uni-bochum.de
Baer
Marcel
M
Schreiner
Eduard
E
Stoll
Raphael
R
Marx
Dominik
D
D003198:Computer Simulation; D004549:Elastin / Q000737:chemistry* / Q000235:genetics; D009682:Magnetic Resonance Spectroscopy; D009038:Motion; D016297:Mutagenesis, Site-Directed; D009842:Oligopeptides; D010455:Peptides / Q000737:chemistry* / Q000235:genetics; D011392:Proline; D011487:Protein Conformation; D044366:Transition Temperature
D009842:Oligopeptides; D010455:Peptides; C094883:valyl-prolyl-glycyl-valyl-glycine; D004549:Elastin; D011392:Proline