Minimotif miner 2nd release: a database and web system for motif search.
Minimotif Miner (MnM) consists of a minimotif database and a web-based application that enables prediction of motif-based functions in user-supplied protein queries. We have revised MnM by expanding the database more than 10-fold to approximately 5000 motifs and standardized the motif function definitions. The web-application user interface has been redeveloped with new features including improved navigation, screencast-driven help, support for alias names and expanded SNP analysis. A sample analysis of prion shows how MnM 2 can be used. Weblink: http://mnm.engr.uconn.edu, weblink for version 1 is http://sms.engr.uconn.edu.
Rajasekaran
Sanguthevar
S
Department of Computer Science and Engineering, University of Connecticut, Storrs, CT 06029-2155, USA. rajasek@engr.uconn.edu
Balla
Sudha
S
Gradie
Patrick
P
Gryk
Michael R
MR
Kadaveru
Krishna
K
Kundeti
Vamsi
V
Maciejewski
Mark W
MW
Mi
Tian
T
Rubino
Nicholas
N
Vyas
Jay
J
Schiller
Martin R
MR
D020816:Amino Acid Motifs / Q000235:genetics; D030562:Databases, Protein; D020407:Internet; D020641:Polymorphism, Single Nucleotide; D011328:Prions; D054730:Protein Interaction Domains and Motifs; D020539:Sequence Analysis, Protein; D014584:User-Computer Interface
D011328:Prions