title: Segmentation of vessels cluttered with cells using a physics based model.
abstract: Segmentation of vessels in biomedical images is important as it can provide insight into analysis of vascular morphology, topology and is required for kinetic analysis of flow velocity and vessel permeability. Intravital microscopy is a powerful tool as it enables in vivo imaging of both vasculature and circulating cells. However, the analysis of vasculature in those images is difficult due to the presence of cells and their image gradient. In this paper, we provide a novel method of segmenting vessels with a high level of cell related clutter. A set of virtual point pairs ("vessel probes") are moved reacting to forces including Vessel Vector Flow (VVF) and Vessel Boundary Vector Flow (VBVF) forces. Incorporating the cell detection, the VVF force attracts the probes toward the vessel, while the VBVF force attracts the virtual points of the probes to localize the vessel boundary without being distracted by the image features of the cells. The vessel probes are moved according to Newtonian Physics reacting to the net of forces applied on them. We demonstrate the results on a set of five real in vivo images of liver vasculature cluttered by white blood cells. When compared against the ground truth prepared by the technician, the Root Mean Squared Error (RMSE) of segmentation with VVF and VBVF was 55% lower than the method without VVF and VBVF.
authors.affiliation: Department of Computer Science, University of North Carolina at Charlotte, USA. sjschmug@uncc.edu
authors.forename: Stephen J
authors.initials: SJ
authors.lastname: Schmugge
authors.forename: Steve
authors.initials: S
authors.lastname: Keller
authors.forename: Nhat
authors.initials: N
authors.lastname: Nguyen
authors.forename: Richard
authors.initials: R
authors.lastname: Souvenir
authors.forename: Toan
authors.initials: T
authors.lastname: Huynh
authors.forename: Mark
authors.initials: M
authors.lastname: Clemens
authors.forename: Min C
authors.initials: MC
authors.lastname: Shin
mesh_terms: D000465:Algorithms; D000818:Animals; D001185:Artificial Intelligence; D001773:Blood Cells / Q000166:cytology*; D001808:Blood Vessels / Q000166:cytology*; D003198:Computer Simulation; D007089:Image Enhancement / Q000379:methods; D007090:Image Interpretation, Computer-Assisted / Q000379:methods*; D018715:Microscopy, Video / Q000379:methods*; D008954:Models, Biological; D010363:Pattern Recognition, Automated / Q000379:methods*; D010825:Physics / Q000379:methods; D051381:Rats; D015203:Reproducibility of Results; D012680:Sensitivity and Specificity