title: Lung cancer gene associated with COPD: triple whammy or possible confounding effect?
abstract: Recently, several large genome-wide association studies have identified a putative "lung cancer" locus in the nicotinic acetylcholine receptor subunit genes (nAChR) on 15q25. However, these findings may be confounded by the presence of chronic obstructive pulmonary disease (COPD), which is also strongly associated with smoking exposure and lung cancer. This is likely as the prevalence of COPD in lung cancer cohorts is as much as two-fold greater than that reported in smoking control populations (50 versus 20%). The present authors compared the genotype frequencies of the most strongly associated single nucleotide polymorphism (rs16969968) in the alpha5 subunit of the nAChR gene cluster between three matched smoking cohorts. The AA genotype was found to be more frequent and was seen in 437 (16%) lung cancer cases and 445 (14%) COPD cases compared with 475 (9%) healthy smoking controls. More importantly, when 429 lung cancer cases were divided according to spirometry results (performed within 3 months of diagnosis, prior to surgery and in the absence of effusions or collapse), the AA genotype was present in 19 and 11% of cases with and without COPD, respectively. These findings suggest that the association between the alpha5 subunit nicotinic acetylcholine receptor single nucleotide polymorphism and lung cancer may, in part, be confounded by chronic obstructive pulmonary disease.
authors.affiliation: Dept of Medicine, University of Auckland, Auckland, New Zealand. roberty@adhb.govt.nz
authors.forename: R P
authors.initials: RP
authors.lastname: Young
authors.forename: R J
authors.initials: RJ
authors.lastname: Hopkins
authors.forename: B A
authors.initials: BA
authors.lastname: Hay
authors.forename: M J
authors.initials: MJ
authors.lastname: Epton
authors.forename: P N
authors.initials: PN
authors.lastname: Black
authors.forename: G D
authors.initials: GD
authors.lastname: Gamble
mesh_terms: D000368:Aged; D000369:Aged, 80 and over; D002884:Chromosomes, Human, Pair 15; D015331:Cohort Studies; D005260:Female; D020022:Genetic Predisposition to Disease; D016678:Genome; D006801:Humans; D008175:Lung Neoplasms / Q000150:complications* / Q000208:ethnology / Q000235:genetics*; D008297:Male; D008875:Middle Aged; D020641:Polymorphism, Single Nucleotide; D029424:Pulmonary Disease, Chronic Obstructive / Q000150:complications* / Q000208:ethnology / Q000235:genetics*; D011978:Receptors, Nicotinic / Q000235:genetics; D012907:Smoking
chemical_list: D011978:Receptors, Nicotinic