Molecular modeling of the alpha9alpha10 nicotinic acetylcholine receptor subtype.
This study reports the comparative molecular modeling, docking and dynamic simulations of human alpha9alpha10 nicotinic acetylcholine receptors complexed with acetylcholine, nicotine and alpha-conotoxin RgIA, using as templates the crystal structures of Aplysia californica and Lymnaea stagnalis acetylcholine binding proteins. The molecular dynamics simulations showed that Arg112 in the complementary alpha10(-) subunit, is a determinant for recognition in the site that binds small ligands. However, Glu195 in the principal alpha9(+), and Asp114 in the complementary alpha10(-) subunit, might confer the potency and selectivity to alpha-conotoxin RgIA when interacting with Arg7 and Arg9 of this ligand.
Pérez
Edwin G
EG
Department of Chemistry, Faculty of Sciences, University of Chile, Casilla, Santiago, Chile.
Cassels
Bruce K
BK
Zapata-Torres
Gerald
G
D000109:Acetylcholine / Q000737:chemistry; D000596:Amino Acids; D000818:Animals; D001048:Aplysia / Q000737:chemistry; D001665:Binding Sites; D003198:Computer Simulation; D020916:Conotoxins / Q000737:chemistry; D006801:Humans; D008195:Lymnaea / Q000737:chemistry; D008958:Models, Molecular; D009538:Nicotine / Q000737:chemistry; D011485:Protein Binding; D011978:Receptors, Nicotinic / Q000737:chemistry*
D000596:Amino Acids; D020916:Conotoxins; D011978:Receptors, Nicotinic; C443079:nAChR alpha9; D009538:Nicotine; D000109:Acetylcholine