title: Reclassification of subspecies of Acidovorax avenae as A. Avenae (Manns 1905) emend., A. cattleyae (Pavarino, 1911) comb. nov., A. citrulli Schaad et al., 1978) comb. nov., and proposal of A. oryzae sp. nov.
abstract: The bacterium Acidovorax avenae causes disease in a wide range of economically important monocotyledonous and dicotyledonous plants, including corn, rice, watermelon, anthurium, and orchids. Genotypic and phenotypic relatedness among strains of phytopathogenic A. avenae subsp. avenae, A. avenae subsp. citrulli, A. avenae subsp. cattleyae and A. konjaci, as well as all other Acidovorax species, including A. facilis, the type strain of Acidovorax, was determined. The 16s rDNA sequencing confirmed previous studies showing the environmental species to be very distant from the phytopathogenic species. DNA/DNA reassociation assays on the different strains of A. avenae revealed four (A, B, C, and D) distinct genotypes. Taxon A included six A. avenae subsp. avenae strains from corn that had a mean reciprocal similarity of 81%; taxon B included six A. avenae subsp. avenae strains from rice that had a mean reciprocal similarity of 97%; taxon C contained 11 A. avenae subsp. citrulli strains from cucurbits (cantaloupe, watermelon, and pumpkin) that had a mean reciprocal similarity of 88%, and taxon D contained four A. avenae subsp. cattleyae strains from orchids that had a mean similarity of 98%. The mean reciprocal relatedness between taxa A, B, C, and D was less than 70%. Sequence analysis of 16S rDNA and the 16S-23S rDNA internally transcribed spacer region, as well as AFLP analysis, revealed the same four taxa. All four were easily differentiated phenotypically from each other and from all other recognized Acidovorax species. Strains of A. avenae did not contain 3-hydroxyoctanoic acid, which was found in all other species. On the basis of these and previous genetic and phenotypic results, we propose an emendation of the species A. avenae. A. avenae subsp. citrulli (C strains) and A. avenae subsp. cattleyae (D strains) should be elevated to species rank as A. citrulli and A. cattleyae, respectively. We further propose a new taxon for the B strains, A. oryzae sp. nov. with FC-143T = ICPB 30003T = ICMP 3960T = ATCC 19882T as the type strain.
authors.affiliation: ARS-USDA, Foreign Disease-Weed Science Research Unit, 1301 Ditto Avenue, Ft. Detrick, MD 21702, USA. norman.schaad@ars.usda.gov
authors.forename: Norman W
authors.initials: NW
authors.lastname: Schaad
authors.forename: Elena
authors.initials: E
authors.lastname: Postnikova
authors.forename: Aaron
authors.initials: A
authors.lastname: Sechler
authors.forename: Larry E
authors.initials: LE
authors.lastname: Claflin
authors.forename: Anne K
authors.initials: AK
authors.lastname: Vidaver
authors.forename: Jeffrey B
authors.initials: JB
authors.lastname: Jones
authors.forename: Irina
authors.initials: I
authors.lastname: Agarkova
authors.forename: Alexander
authors.initials: A
authors.lastname: Ignatov
authors.forename: Ellen
authors.initials: E
authors.lastname: Dickstein
authors.forename: Bruce A
authors.initials: BA
authors.lastname: Ramundo
mesh_terms: D054458:Amplified Fragment Length Polymorphism Analysis; D042621:Comamonadaceae / Q000145:classification* / Q000235:genetics / Q000472:pathogenicity / Q000502:physiology; D021903:DNA, Ribosomal Spacer / Q000235:genetics; D005227:Fatty Acids / Q000378:metabolism; D005798:Genes, Bacterial; D009693:Nucleic Acid Hybridization; D029595:Orchidaceae / Q000382:microbiology; D010641:Phenotype; D010935:Plant Diseases / Q000382:microbiology*; D010944:Plants / Q000382:microbiology*; D010945:Plants, Edible / Q000382:microbiology; D012336:RNA, Ribosomal, 16S / Q000235:genetics
chemical_list: D021903:DNA, Ribosomal Spacer; D005227:Fatty Acids; D012336:RNA, Ribosomal, 16S