title: Identification of differentially expressed root genes upon rhizomania disease.
abstract: Rhizomania is one of the most devastating sugar beet diseases. It is caused by Beet necrotic yellow vein virus (BNYVV), which induces abnormal rootlet proliferation. To understand better the physiological and molecular basis of the disorder, transcriptome analysis was performed by restriction fragment differential display polymerase chain reaction (RFDD-PCR), which provided differential gene expression profiles between non-infected and infected sugar beet roots. Two distinct viral isolates were used to detect specific or general virus-induced genes. Differentially expressed genes were selected and identified by sequence analysis, followed by reverse Northern and reverse transcriptase PCR experiments. These latter analyses of different plants (Beta vulgaris and Beta macrocarpa) infected under distinct standardized conditions revealed specific and variable expressions. Candidate genes were linked to cell development, metabolism, defence signalling and oxidative stress. In addition, the expression of already characterized genes linked to defence response (pathogenesis-related protein genes), auxin signalling and cell elongation was also studied to further examine some aspects of the disease. Differential expression was retrieved in both B. vulgaris and B. macrocarpa. However, some candidate genes were found to be deregulated in only one plant species, suggesting differential response to BNYVV or specific responses to the BNYVV vector.
authors.affiliation: Institut de Biologie Moléculaire des Plantes, laboratoire propre du CNRS (UPR 2357) conventionné avec l'Université Louis Pasteur (Strasbourg 1), 12 rue du Général Zimmer, 67084 Strasbourg, France.
authors.forename: Laure
authors.initials: L
authors.lastname: Schmidlin
authors.forename: Erik
authors.initials: E
authors.lastname: DE Bruyne
authors.forename: Guy
authors.initials: G
authors.lastname: Weyens
authors.forename: Marc
authors.initials: M
authors.lastname: Lefebvre
authors.forename: David
authors.initials: D
authors.lastname: Gilmer
mesh_terms: D027461:Beta vulgaris / Q000235:genetics* / Q000821:virology*; D015152:Blotting, Northern; D015870:Gene Expression / Q000235:genetics*; D010935:Plant Diseases / Q000235:genetics / Q000821:virology; D018517:Plant Roots / Q000235:genetics* / Q000821:virology*; D010942:Plant Viruses / Q000235:genetics / Q000472:pathogenicity*; D016133:Polymerase Chain Reaction; D012328:RNA Viruses / Q000235:genetics / Q000472:pathogenicity; D020133:Reverse Transcriptase Polymerase Chain Reaction