title: ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets.
abstract: ArrayPlex is a software package that centrally provides a large number of flexible toolsets useful for functional genomics, including microarray data storage, quality assessments, data visualization, gene annotation retrieval, statistical tests, genomic sequence retrieval and motif analysis. It uses a client-server architecture based on open source components, provides graphical, command-line, and programmatic access to all needed resources, and is extensible by virtue of a documented application programming interface. ArrayPlex is available at http://sourceforge.net/projects/arrayplex/.
authors.affiliation: Center for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, 1 University Station A4800, Austin, Texas 78712, USA. pkillion@mail.utexas.edu
authors.forename: Patrick J
authors.initials: PJ
authors.lastname: Killion
authors.forename: Vishwanath R
authors.initials: VR
authors.lastname: Iyer
mesh_terms: D023281:Genomics; D020407:Internet; D046228:Microarray Analysis / Q000379:methods*; D012984:Software