title: Teaching synthetic biology, bioinformatics and engineering to undergraduates: the interdisciplinary Build-a-Genome course.
abstract: A major challenge in undergraduate life science curricula is the continual evaluation and development of courses that reflect the constantly shifting face of contemporary biological research. Synthetic biology offers an excellent framework within which students may participate in cutting-edge interdisciplinary research and is therefore an attractive addition to the undergraduate biology curriculum. This new discipline offers the promise of a deeper understanding of gene function, gene order, and chromosome structure through the de novo synthesis of genetic information, much as synthetic approaches informed organic chemistry. While considerable progress has been achieved in the synthesis of entire viral and prokaryotic genomes, fabrication of eukaryotic genomes requires synthesis on a scale that is orders of magnitude higher. These high-throughput but labor-intensive projects serve as an ideal way to introduce undergraduates to hands-on synthetic biology research. We are pursuing synthesis of Saccharomyces cerevisiae chromosomes in an undergraduate laboratory setting, the Build-a-Genome course, thereby exposing students to the engineering of biology on a genomewide scale while focusing on a limited region of the genome. A synthetic chromosome III sequence was designed, ordered from commercial suppliers in the form of oligonucleotides, and subsequently assembled by students into approximately 750-bp fragments. Once trained in assembly of such DNA "building blocks" by PCR, the students accomplish high-yield gene synthesis, becoming not only technically proficient but also constructively critical and capable of adapting their protocols as independent researchers. Regular "lab meeting" sessions help prepare them for future roles in laboratory science.
authors.affiliation: Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21205, USA.
authors.forename: Jessica S
authors.initials: JS
authors.lastname: Dymond
authors.forename: Lisa Z
authors.initials: LZ
authors.lastname: Scheifele
authors.forename: Sarah
authors.initials: S
authors.lastname: Richardson
authors.forename: Pablo
authors.initials: P
authors.lastname: Lee
authors.forename: Srinivasan
authors.initials: S
authors.lastname: Chandrasegaran
authors.forename: Joel S
authors.initials: JS
authors.lastname: Bader
authors.forename: Jef D
authors.initials: JD
authors.lastname: Boeke
mesh_terms: D001695:Biology / Q000193:education*; D019295:Computational Biology / Q000193:education*; D003479:Curriculum; D005813:Genes, Synthetic; D005818:Genetic Engineering / Q000191:economics; D016678:Genome / Q000235:genetics*; D020407:Internet; D008967:Molecular Biology / Q000193:education; D012106:Research; D013334:Students; D013663:Teaching