title: Performance of a gradient-based shift estimator in a spatially sparse data environment: tracking the sub-pixel motion of fluorescent particles.
abstract: Through a series of numerical simulations, we investigate the suitability of a relatively new gradient-based particle-tracking algorithm for efficiently quantifying sub-pixel shifts of fluorescently labelled cells or particles from a sequence of video microscopy images. The algorithm excels at estimating sub-0.5 pixel per frame shifts in both data-dense (e.g. laser speckle imaging) and data-sparse (e.g. fluorescence imaging) applications. No upsampling (i.e. interpolation) is required to achieve the sub-pixel shift resolution, and thus the approach avoids the complexity and potential errors associated with the interpolation process. An efficient MATLAB sub-routine is provided for implementing the algorithm.
authors.affiliation: Department of Biomedical Engineering, Oregon Health & Science University, Portland, OR 97239, USA. skirkpat@bme.ogi.edu
authors.forename: S J
authors.initials: SJ
authors.lastname: Kirkpatrick
authors.forename: D D
authors.initials: DD
authors.lastname: Duncan
mesh_terms: D007091:Image Processing, Computer-Assisted / Q000379:methods*; D008856:Microscopy, Fluorescence / Q000379:methods*; D009068:Movement