Selection of oligonucleotides for whole-genome microarrays with semi-automatic update.
Oligonucleotide microarray probes are designed to match specific transcripts present in databases that are regularly updated. As a consequence probes should be checked every new database release. We thus developed an informatics tool allowing the semi-automatic update of probe collections of long oligonucleotides and applied it to the mouse RefSeq database.


BACKGROUND
http://www.bio.espci.fr/sol/
Golfier
G
G
Neurobiologie et Diversité Cellulaire, CNRS UMR7637, Ecole Supérieure de Physique et de Chimie Industrielles, 10 rue Vauquelin, 75005 Paris, France.
Lemoine
S
S
van Miltenberg
A
A
Bendjoudi
A
A
Rossier
J
J
Le Crom
S
S
Potier
M-C
MC
D000465:Algorithms; D001331:Automation; D019295:Computational Biology / Q000379:methods*; D030561:Databases, Nucleic Acid; D016678:Genome / Q000235:genetics*; D020411:Oligonucleotide Array Sequence Analysis; D009841:Oligonucleotides / Q000235:genetics*; D014584:User-Computer Interface
D009841:Oligonucleotides