title: Molecular mechanism for generation of antibody memory.
abstract: Activation-induced cytidine deaminase (AID) is the essential enzyme inducing the DNA cleavage required for both somatic hypermutation and class switch recombination (CSR) of the immunoglobulin gene. We originally proposed the RNA-editing model for the mechanism of DNA cleavage by AID. We obtained evidence that fulfils three requirements for CSR by this model, namely (i) AID shuttling between nucleus and cytoplasm, (ii) de novo protein synthesis for CSR, and (iii) AID-RNA complex formation. The alternative hypothesis, designated as the DNA-deamination model, assumes that the in vitro DNA deamination activity of AID is representative of its physiological function in vivo. Furthermore, the resulting dU was removed by uracil DNA glycosylase (UNG) to generate a basic site, followed by phosphodiester bond cleavage by AP endonuclease. We critically examined each of these provisional steps. We identified a cluster of mutants (H48A, L49A, R50A and N51A) that had particularly higher CSR activities than expected from their DNA deamination activities. The most striking was the N51A mutant that had no ability to deaminate DNA in vitro but retained approximately 50 per cent of the wild-type level of CSR activity. We also provide further evidence that UNG plays a non-canonical role in CSR, namely in the repair step of the DNA breaks. Taking these results together, we favour the RNA-editing model for the function of AID in CSR.
authors.affiliation: Department of Immunology and Genomic Medicine, Graduate School of Medicine, Kyoto University, Yoshida Sakyo-ku, Kyoto 606-8501, Japan.
authors.forename: Velizar
authors.initials: V
authors.lastname: Shivarov
authors.forename: Reiko
authors.initials: R
authors.lastname: Shinkura
authors.forename: Tomomitsu
authors.initials: T
authors.lastname: Doi
authors.forename: Nasim A
authors.initials: NA
authors.lastname: Begum
authors.forename: Hitoshi
authors.initials: H
authors.lastname: Nagaoka
authors.forename: Il-Mi
authors.initials: IM
authors.lastname: Okazaki
authors.forename: Satomi
authors.initials: S
authors.lastname: Ito
authors.forename: Taichiro
authors.initials: T
authors.lastname: Nonaka
authors.forename: Kazuo
authors.initials: K
authors.lastname: Kinoshita
authors.forename: Tasuku
authors.initials: T
authors.lastname: Honjo
mesh_terms: D000906:Antibodies / Q000276:immunology*; D003564:Cytidine Deaminase / Q000378:metabolism*; D004247:DNA / Q000378:metabolism*; D003641:Deamination; D017578:Immunoglobulin Class Switching / Q000235:genetics / Q000276:immunology*; D007156:Immunologic Memory; D018448:Models, Immunological; D017393:RNA Editing / Q000276:immunology*
chemical_list: D000906:Antibodies; D004247:DNA; D003564:Cytidine Deaminase