title: Evolutionary analysis of endopolygalacturonase-encoding genes of Botrytis cinerea.
abstract: Sequence analysis of five of the six endopolygalacturonase-encoding genes (Bcpg1, Bcpg2, Bcpg3, Bcpg4, Bcpg5) from 32 strains of Botrytis cinerea showed marked gene to gene differences in the amount of among-strains diversity. Bcpg4 was almost invariable in all strains; Bcpg3 and Bcpg5 showed a moderate variability, similar to that of non-pathogenicity-associated genes examined in other studies. Conversely, Bcpg1 and Bcpg2 were highly variable and were shown to be under positive selection based on the McDonald-Kreitman test and likelihood ratio test. The evolution of the five endopolygalacturonase genes is explained by their different ecophysiological role. Diversification and balancing selection, as detected in Bcpg1 and Bcpg2, can be used by the pathogen to escape recognition by the host and delay plant reaction in the early phases of infection. The analysis of the polymorphisms and the location of the sites with high probability of being positively selected highlighted the relevance of variability of the BcPG1 and BcPG2 proteins at their C-terminal end. By contrast, the absence of variability in Bcpg4 suggests that the efficiency of the product of this gene is critical for B. cinerea growth in late phases of infection or during intraspecific competition, thus markedly affecting strain fitness.
authors.affiliation: Dipartimento di Biologia e Protezione delle Piante, Università di Udine, via Scienze 208, 33100 Udine, Italy.
authors.forename: Emanuele
authors.initials: E
authors.lastname: Cettul
authors.forename: Djaouida
authors.initials: D
authors.lastname: Rekab
authors.forename: Romano
authors.initials: R
authors.lastname: Locci
authors.forename: Giuseppe
authors.initials: G
authors.lastname: Firrao
mesh_terms: D020171:Botrytis / Q000201:enzymology / Q000235:genetics*; D019143:Evolution, Molecular; D005656:Fungal Proteins / Q000235:genetics*; D010802:Phylogeny; D011096:Polygalacturonase / Q000145:classification / Q000235:genetics*; D016133:Polymerase Chain Reaction; D011110:Polymorphism, Genetic; D017422:Sequence Analysis, DNA
chemical_list: D005656:Fungal Proteins; D011096:Polygalacturonase