title: Parameter estimation for mathematical models of NKCC2 cotransporter isoforms.
abstract: An optimization problem, formulated using a nonlinear least-squares approach, was used to estimate parameters for kinetic models of the three isoforms of the kidney-specific Na-K-2Cl (NKCC2) cotransporter. Specifically, the optimization problem estimates the magnitude of model parameters (i.e., off-binding and translocation rate constants) by minimizing the distance between model unidirectional fluxes and published unidirectional (86)Rb(+) uptake curves for the A, B, and F isoforms of the NKCC2 cotransporter obtained in transfected Xenopus oocytes. By using different symmetry assumptions, NKCC2 models with five, six, seven, or eight parameters were evaluated. The optimization method identified parameter sets that yielded computed unidirectional fluxes consistent with the uptake data. However, the parameter values were not unique, in that systematic exploration of the parameter space revealed alternative parameter sets that fit the data with similar accuracy. Finally, we demonstrate that the optimization method can identify parameter sets for the three transporter isoforms that differ only in ion binding affinities, a result that is consistent with a published mutagenesis analysis of the molecular and structural bases for the differences in (86)Rb(+) uptake among the A, B, and F isoforms. These NKCC2 cotransporter models will facilitate the development of larger scale models of ion transport by thick ascending limb cells.
authors.affiliation: Dept. of Computer Science, Box 23328, Univ. of Puerto Rico, Rio Piedras, PR 00931-3328. mmarcano@uprrp.edu
authors.forename: Mariano
authors.initials: M
authors.lastname: Marcano
authors.forename: Hun-Mo
authors.initials: HM
authors.lastname: Yang
authors.forename: Aniel
authors.initials: A
authors.lastname: Nieves-González
authors.forename: Chris
authors.initials: C
authors.lastname: Clausen
authors.forename: Leon C
authors.initials: LC
authors.lastname: Moore
mesh_terms: D000818:Animals; D002712:Chlorides / Q000378:metabolism; D007700:Kinetics; D016018:Least-Squares Analysis; D051379:Mice; D008956:Models, Chemical; D020033:Protein Isoforms / Q000378:metabolism; D012964:Sodium / Q000378:metabolism; D028021:Sodium-Potassium-Chloride Symporters / Q000378:metabolism*; D064466:Solute Carrier Family 12, Member 1; D014981:Xenopus
chemical_list: D002712:Chlorides; D020033:Protein Isoforms; C578715:Slc12a1 protein, mouse; D028021:Sodium-Potassium-Chloride Symporters; D064466:Solute Carrier Family 12, Member 1; D012964:Sodium