Polymer induced condensation of DNA supercoils.
Macromolecular crowding is thought to be a significant factor driving DNA condensation in prokaryotic cells. Whereas DNA in prokaryotes is supercoiled, studies on crowding-induced DNA condensation have so far focused on linear DNA. Here we compare DNA condensation by poly(ethylene oxide) for supercoiled and linearized pUC18 plasmid DNA. It is found that supercoiling has only a limited influence on the critical amount of PEO needed to condense plasmid DNA. In order to pack DNA supercoils in condensates, it seems inevitable that they must be deformed in one way or another, to facilitate dense packing of DNA. Analytical estimates and Monte Carlo simulations indicate that packing of DNA supercoils in condensates is most likely facilitated by a decrease of the superhelical diameter rather than by unwinding of the supercoils.
Ramos
José Esio Bessa
JE
Department of Physics, IBILCE UNESP, Universidade Estadual Paulista, R. Cristovao Colombo 2265, 15054-000 Sao Jose do Rio Preto SP, Brazil.
Neto
João Ruggiero
JR
de Vries
Renko
R
D004278:DNA, Superhelical / Q000737:chemistry*; D008956:Models, Chemical; D009010:Monte Carlo Method; D009690:Nucleic Acid Conformation / Q000187:drug effects*; D010957:Plasmids; D011092:Polyethylene Glycols / Q000737:chemistry / Q000494:pharmacology*; D013696:Temperature
D004278:DNA, Superhelical; D011092:Polyethylene Glycols