title: Kinetic isotope effects on dehalogenations at an aromatic carbon.
abstract: In order to interpret the observed isotopic fractionation it is necessaryto understand its relationship with the isotope effect(s) on steps that occur during the conversion of the initial reactant to the final product. We examine this relationship from the biochemical point of view and elaborate on the consequences of the assumptions that it is based on. We illustrate the discrepancies between theoretical and experimental interpretation of kinetic isotope effects on examples of dehalogenation reactions that occur at an aromatic carbon atom. The examples include 4-chlorobenzoyl-CoA dehalogenase-catalyzed conversion of 4-chlorobenzoyl-CoA to 4-hydroxybenzoyl-CoA, dehaloperoxidase-catalyzed conversion of 2,4,6-trichlorophenol to 2,6-dichloroquinone, and spontaneous hydrolysis of atrazine at pH 12. For this latter reaction we have measured the chlorine kinetic isotope effect and estimated its value theoretically at the DFT level of theory. Results of chlorine kinetic isotope effects suggest that the studied dechlorination reactions proceed in a single step with significant weakening of the carbon-chlorine bond in the transition state.
authors.affiliation: Institute of Applied Radiation Chemistry, Technical University of Lodz, Zeromskiego 116, 90-924 Lodz, Poland.
authors.forename: Agnieszka
authors.initials: A
authors.lastname: Dybala-Defratyka
authors.forename: Lukasz
authors.initials: L
authors.lastname: Szatkowski
authors.forename: Rafał
authors.initials: R
authors.lastname: Kaminski
authors.forename: Monika
authors.initials: M
authors.lastname: Wujec
authors.forename: Agata
authors.initials: A
authors.lastname: Siwek
authors.forename: Piotr
authors.initials: P
authors.lastname: Paneth
mesh_terms: D001280:Atrazine / Q000737:chemistry / Q000378:metabolism; D002244:Carbon / Q000737:chemistry*; D002384:Catalysis; D002733:Chlorophenols / Q000737:chemistry / Q000378:metabolism; D054879:Halogenation; D006454:Hemoglobins / Q000378:metabolism; D006841:Hydrocarbons, Aromatic / Q000737:chemistry*; D006867:Hydrolases / Q000378:metabolism; D006868:Hydrolysis; D007554:Isotopes; D007700:Kinetics; D008958:Models, Molecular; D010544:Peroxidases / Q000378:metabolism; D010650:Phenylalanine Ammonia-Lyase / Q000378:metabolism
chemical_list: D002733:Chlorophenols; D006454:Hemoglobins; D006841:Hydrocarbons, Aromatic; D007554:Isotopes; D002244:Carbon; C098661:DHP I dehaloperoxidase; D010544:Peroxidases; D006867:Hydrolases; C084333:4-chlorobenzoyl coenzyme A dehalogenase; D010650:Phenylalanine Ammonia-Lyase; C024564:2,4,6-trichlorophenol; D001280:Atrazine