title: Genome-wide siRNA-based functional genomics of pigmentation identifies novel genes and pathways that impact melanogenesis in human cells.
abstract: Melanin protects the skin and eyes from the harmful effects of UV irradiation, protects neural cells from toxic insults, and is required for sound conduction in the inner ear. Aberrant regulation of melanogenesis underlies skin disorders (melasma and vitiligo), neurologic disorders (Parkinson's disease), auditory disorders (Waardenburg's syndrome), and opthalmologic disorders (age related macular degeneration). Much of the core synthetic machinery driving melanin production has been identified; however, the spectrum of gene products participating in melanogenesis in different physiological niches is poorly understood. Functional genomics based on RNA-mediated interference (RNAi) provides the opportunity to derive unbiased comprehensive collections of pharmaceutically tractable single gene targets supporting melanin production. In this study, we have combined a high-throughput, cell-based, one-well/one-gene screening platform with a genome-wide arrayed synthetic library of chemically synthesized, small interfering RNAs to identify novel biological pathways that govern melanin biogenesis in human melanocytes. Ninety-two novel genes that support pigment production were identified with a low false discovery rate. Secondary validation and preliminary mechanistic studies identified a large panel of targets that converge on tyrosinase expression and stability. Small molecule inhibition of a family of gene products in this class was sufficient to impair chronic tyrosinase expression in pigmented melanoma cells and UV-induced tyrosinase expression in primary melanocytes. Isolation of molecular machinery known to support autophagosome biosynthesis from this screen, together with in vitro and in vivo validation, exposed a close functional relationship between melanogenesis and autophagy. In summary, these studies illustrate the power of RNAi-based functional genomics to identify novel genes, pathways, and pharmacologic agents that impact a biological phenotype and operate outside of preconceived mechanistic relationships.
authors.affiliation: Department of Dermatology, University of California Irvine, Irvine, California, United States of America. aganesan@uci.edu
authors.forename: Anand K
authors.initials: AK
authors.lastname: Ganesan
authors.forename: Hsiang
authors.initials: H
authors.lastname: Ho
authors.forename: Brian
authors.initials: B
authors.lastname: Bodemann
authors.forename: Sean
authors.initials: S
authors.lastname: Petersen
authors.forename: Jayavani
authors.initials: J
authors.lastname: Aruri
authors.forename: Shiney
authors.initials: S
authors.lastname: Koshy
authors.forename: Zachary
authors.initials: Z
authors.lastname: Richardson
authors.forename: Lu Q
authors.initials: LQ
authors.lastname: Le
authors.forename: Tatiana
authors.initials: T
authors.lastname: Krasieva
authors.forename: Michael G
authors.initials: MG
authors.lastname: Roth
authors.forename: Pat
authors.initials: P
authors.lastname: Farmer
authors.forename: Michael A
authors.initials: MA
authors.lastname: White
mesh_terms: D000818:Animals; D002460:Cell Line; D015894:Genome, Human; D023281:Genomics; D006801:Humans; D008543:Melanins / Q000235:genetics / Q000378:metabolism; D008544:Melanocytes / Q000378:metabolism*; D051379:Mice; D008810:Mice, Inbred C57BL; D034622:RNA Interference; D034741:RNA, Small Interfering / Q000235:genetics*; D015398:Signal Transduction; D012871:Skin Diseases / Q000235:genetics* / Q000378:metabolism; D012880:Skin Pigmentation / Q000235:genetics*
chemical_list: D008543:Melanins; D034741:RNA, Small Interfering