title: Dominant genotypes in mucosa-associated Escherichia coli strains from pediatric patients with inflammatory bowel disease.
abstract: BACKGROUND
  Studies performed in adults with inflammatory bowel disease (IBD) have suggested that mucosa-associated Escherichia coli strains may be involved in its pathogenesis. The aim of this study was to characterize E. coli strains from the intestinal mucosa of pediatric IBD patients to investigate whether a particular subset of strains could be associated with the disease.
  
  
  METHODS
  We analyzed the genomic and phenotypic traits of 60 E. coli strains isolated from biopsies of pediatric patients with Crohn's disease (CD), ulcerative colitis (UC), and from age-matched controls.
  
  
  RESULTS
  No noteworthy differences were found in the distribution of phylogroups. The percentage of adhesive E. coli strains was similar in biopsies from patients and controls. However, the adhesion ability of E. coli strains differed between ileal and colonic or rectal areas, only in the strains from CD and UC patients. The percentage of E. coli possessing more than 1 of the adhesive/virulence determinants was significantly higher in strains from UC than from CD and controls. Interestingly, the genetic profile examination revealed 2 large clusters of genetically linked E. coli strains from IBD patients. Ninety-two percent of the strains isolated from CD patients were in the first cluster (A) and were distributed between 2 genetic subclusters (A1 and A2), while a second cluster (B) contained most of the strains isolated from UC (78%; subcluster B1), and control strains (77%; subcluster B2).
  
  
  CONCLUSIONS
  Genomic analysis of mucosa-associated E. coli strains found a close genetic association between strains isolated from CD and UC patients.
authors.affiliation: Department of Public Health Sciences, University of Rome La Sapienza, Rome, Italy.
authors.forename: Serena
authors.initials: S
authors.lastname: Schippa
authors.forename: Maria Pia
authors.initials: MP
authors.lastname: Conte
authors.forename: Osvaldo
authors.initials: O
authors.lastname: Borrelli
authors.forename: Valerio
authors.initials: V
authors.lastname: Iebba
authors.forename: Marta
authors.initials: M
authors.lastname: Aleandri
authors.forename: Lucilla
authors.initials: L
authors.lastname: Seganti
authors.forename: Catia
authors.initials: C
authors.lastname: Longhi
authors.forename: Fernanda
authors.initials: F
authors.lastname: Chiarini
authors.forename: John
authors.initials: J
authors.lastname: Osborn
authors.forename: Salvatore
authors.initials: S
authors.lastname: Cucchiara
mesh_terms: D000293:Adolescent; D001422:Bacterial Adhesion; D015373:Bacterial Typing Techniques; D018938:Caco-2 Cells; D002648:Child; D003093:Colitis, Ulcerative / Q000235:genetics / Q000382:microbiology*; D003424:Crohn Disease / Q000235:genetics / Q000382:microbiology*; D004269:DNA, Bacterial / Q000235:genetics*; D004926:Escherichia coli / Q000145:classification* / Q000235:genetics; D004927:Escherichia coli Infections / Q000235:genetics / Q000382:microbiology*; D005260:Female; D005838:Genotype; D006801:Humans; D007082:Ileum / Q000382:microbiology; D007413:Intestinal Mucosa / Q000382:microbiology*; D008297:Male; D011379:Prognosis
chemical_list: D004269:DNA, Bacterial