The gene expression signature of genomic instability in breast cancer is an independent predictor of clinical outcome.
Recently, expression profiling of breast carcinomas has revealed gene signatures that predict clinical outcome, and discerned prognostically relevant breast cancer subtypes. Measurement of the degree of genomic instability provides a very similar stratification of prognostic groups. We therefore hypothesized that these features are linked. We used gene expression profiling of 48 breast cancer specimens that profoundly differed in their degree of genomic instability and identified a set of 12 genes that defines the 2 groups. The biological and prognostic significance of this gene set was established through survival prediction in published datasets from patients with breast cancer. Of note, the gene expression signatures that define specific prognostic subtypes in other breast cancer datasets, such as luminal A and B, basal, normal-like, and ERBB2+, and prognostic signatures including MammaPrint and Oncotype DX, predicted genomic instability in our samples. This remarkable congruence suggests a biological interdependence of poor-prognosis gene signatures, breast cancer subtypes, genomic instability, and clinical outcome.
Habermann
Jens K
JK
Genetics Branch, National Cancer Institute, NIH, Bethesda, MD 20892-8010, USA.
Doering
Jana
J
Hautaniemi
Sampsa
S
Roblick
Uwe J
UJ
Bündgen
Nana K
NK
Nicorici
Daniel
D
Kronenwett
Ulrike
U
Rathnagiriswaran
Shruti
S
Mettu
Rama K R
RK
Ma
Yan
Y
Krüger
Stefan
S
Bruch
Hans-Peter
HP
Auer
Gert
G
Guo
Nancy L
NL
Ried
Thomas
T
D000328:Adult; D000368:Aged; D000369:Aged, 80 and over; D001943:Breast Neoplasms / Q000235:genetics* / Q000401:mortality* / Q000473:pathology; D018572:Disease-Free Survival; D005260:Female; D020869:Gene Expression Profiling; D042822:Genomic Instability; D006801:Humans; D007150:Immunohistochemistry; D008875:Middle Aged; D020411:Oligonucleotide Array Sequence Analysis; D011379:Prognosis