title: ClassRHO: a platform for classification of bacterial rieske non-heme iron ring-hydroxylating oxygenases.
abstract: We have developed an easy-to-use multiplatform classification tool, ClassRHO, which facilitates classification and comparison of bacterial Rieske non-heme iron aromatic ring-hydroxylating oxygenases (RHOs). Visualization and analysis can be generated on-the-fly by entering or uploading RHO query sequences. Pre-computed classifications were implemented for 42 standard RHO sequences. These 42 RHO sequences can be flexibly selected based on user requests. ClassRHO provides users with many options to view and analyze RHO sequences.
authors.affiliation: Division of Personalized Nutrition and Medicine, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR 72079, USA.
authors.forename: Songjoon
authors.initials: S
authors.lastname: Baek
authors.forename: Ohgew
authors.initials: O
authors.lastname: Kweon
authors.forename: Seong-Jae
authors.initials: SJ
authors.lastname: Kim
authors.forename: Dong-Heon
authors.initials: DH
authors.lastname: Baek
authors.forename: James J
authors.initials: JJ
authors.lastname: Chen
authors.forename: Carl E
authors.initials: CE
authors.lastname: Cerniglia
mesh_terms: D001419:Bacteria / Q000378:metabolism*; D016000:Cluster Analysis; D030562:Databases, Protein; D014450:Electron Transport Complex III / Q000145:classification* / Q000378:metabolism; D010105:Oxygenases / Q000145:classification* / Q000378:metabolism; D012984:Software; D014584:User-Computer Interface
chemical_list: C037989:Rieske iron-sulfur protein; D010105:Oxygenases; D014450:Electron Transport Complex III