title: pH Dependence of the photoactive yellow protein photocycle recovery reaction reveals a new late photocycle intermediate with a deprotonated chromophore.
abstract: The recovery reaction of the signaling state of photoactive yellow protein includes the following: (i) deprotonation of the p-coumaryl chromophore, (ii) refolding of the protein, and (iii) chromophore re-isomerization from the cis to the trans configuration. Through analysis of the pH dependence of this recovery reaction, we were able to provide proof for the existence of an additional photocycle intermediate. The spectral similarity between this new intermediate and the dark state indicates that the new intermediate has a deprotonated chromophore, which may facilitate chromophore re-isomerization. This spectral similarity also explains why this new intermediate has not been noticed in earlier studies. For our data analysis we introduce a photocycle model that takes into account the effect of the specific light regime selected, a model that was also used for simulations.
authors.affiliation: Laboratory for Microbiology, Swammerdam Institute for Life Sciences and Netherlands Institute for Systems Biology, University of Amsterdam, 1018 WV Amsterdam, The Netherlands.
authors.forename: Johnny
authors.initials: J
authors.lastname: Hendriks
authors.forename: Klaas J
authors.initials: KJ
authors.lastname: Hellingwerf
mesh_terms: D001426:Bacterial Proteins / Q000737:chemistry* / Q000235:genetics; D020607:Halorhodospira halophila / Q000737:chemistry* / Q000235:genetics; D006863:Hydrogen-Ion Concentration; D007536:Isomerism; D010777:Photochemistry; D020283:Photoreceptors, Microbial / Q000737:chemistry* / Q000235:genetics; D011522:Protons; D011994:Recombinant Proteins / Q000737:chemistry / Q000235:genetics
chemical_list: D001426:Bacterial Proteins; D020283:Photoreceptors, Microbial; D011522:Protons; D011994:Recombinant Proteins; C050162:photoactive yellow protein, Bacteria