Application of rotated PCA models to facilitate interpretation of metabolite profiles: commercial preparations of St. John's Wort.
This paper describes the application of orthogonal rotation of models based on principal component analysis (PCA) of (1)H nuclear magnetic resonance (NMR) spectra and high-performance liquid chromatography-photo diode array detection (HPLC-PDA) profiles of natural product mixtures using extracts of antidepressive pharmaceutical preparations of St. John's wort as an example. (1)H-NMR spectroscopy of complex mixtures is often used in metabolomic, metabonomic and metabolite profiling studies for assessment of sample composition. Interpretation of the derived chemometric models may be complicated because several sample properties often contribute to each principal component and because the influence of individual metabolites may be shared by several principal components. Furthermore, extensive signal overlap in (1)H-NMR spectra poses additional challenges to the interpretation of PCA models derived from such data. Orthogonal rotation of PCA models derived from (1)H-NMR spectra and HPLC-PDA profiles of the extracts of St. John's wort preparations facilitate interpretation of the model. Using the varimax criterion, rotation of loadings provides simpler conditions for understanding the influence of individual metabolites on the observed clustering. Alternatively, rotation of scores simplifies the understanding of the influence of whole metabolite profiles on the clustering of individual samples.
Lawaetz
Anders Juul
AJ
Department of Food Science, Faculty of Life Sciences, University of Copenhagen, Copenhagen, Denmark. ajla@life.ku.dk
Schmidt
Bonnie
B
Staerk
Dan
D
Jaroszewski
Jerzy W
JW
Bro
Rasmus
R
D002851:Chromatography, High Pressure Liquid; D020902:Hypericum / Q000737:chemistry*; D009682:Magnetic Resonance Spectroscopy; D055442:Metabolome; D008958:Models, Molecular; D010936:Plant Extracts / Q000737:chemistry*; D025341:Principal Component Analysis / Q000379:methods
D010936:Plant Extracts