Diversity of solvent dependent energy transfer pathways in heme proteins.
The time scales and pathways of heme cooling in both reduced cytochrome c and oxidized cytochrome c following heme photoexcitation were studied using molecular dynamics simulation. Five different solvent models, including normal water, heavy water, normal glycerol, deuterated glycerol, and a nonpolar solvent, were used in the simulation. Single exponential decay of the excess kinetic energy of the heme following photoexcitation was observed in all systems studied. The simulated time scale for heme cooling in normal water agrees with recent experimental results. In contrast to heme cooling in myoglobin, no solvent dependence was observed for the time scale for heme cooling in cytochrome c. The diversity of solvent dependence results from the different local heme environments in the two proteins. In myoglobin, it has been established that the dominant mechanism for heme cooling is direct energy transfer from the heme to the solvent. In cytochrome c, direct interaction between heme and protein residues forms the dominant energy transfer pathway. This distinction is dictated by protein topology and linked to function.
Zhang
Yong
Y
Department of Chemistry, Boston University, Boston, Massachusetts, 02215, USA.
Straub
John E
JE
D003198:Computer Simulation; D045304:Cytochromes c / Q000737:chemistry; D004735:Energy Transfer; D006420:Hemeproteins / Q000737:chemistry*; D008958:Models, Molecular; D009211:Myoglobin / Q000737:chemistry; D010777:Photochemistry; D017785:Photons; D012997:Solvents
D006420:Hemeproteins; D009211:Myoglobin; D012997:Solvents; D045304:Cytochromes c