Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data.
CONCLUSIONS
We describe an integrative software platform, Prequips, for comparative proteomics-based systems biology analysis that: (i) integrates all information generated from mass spectrometry (MS)-based proteomics as well as from basic proteomics data analysis tools, (ii) visualizes such information for various proteomic analyses via graphical interfaces and (iii) links peptide and protein abundances to external tools often used in systems biology studies.


BACKGROUND
http://prequips.sourceforge.net
Gehlenborg
Nils
N
Institute for Systems Biology, Seattle, USA.
Yan
Wei
W
Lee
Inyoul Y
IY
Yoo
Hyuntae
H
Nieselt
Kay
K
Hwang
Daehee
D
Aebersold
Ruedi
R
Hood
Leroy
L
D002853:Chromatography, Liquid / Q000379:methods*; D019295:Computational Biology / Q000379:methods; D003196:Computer Graphics; D030562:Databases, Protein; D020407:Internet; D011506:Proteins / Q000737:chemistry; D020543:Proteome / Q000032:analysis*; D040901:Proteomics / Q000379:methods*; D012984:Software; D049490:Systems Biology / Q000379:methods; D053719:Tandem Mass Spectrometry / Q000379:methods*; D014584:User-Computer Interface
D011506:Proteins; D020543:Proteome