title: Distinct mechanisms act in concert to mediate cell cycle arrest.
abstract: In response to DNA damage, cells arrest at specific stages in the cell cycle. This arrest must fulfill at least 3 requirements: it must be activated promptly; it must be sustained as long as damage is present to prevent loss of genomic information; and after the arrest, cells must re-enter into the appropriate cell cycle phase to ensure proper ploidy. Multiple molecular mechanisms capable of arresting the cell cycle have been identified in mammalian cells; however, it is unknown whether each mechanism meets all 3 requirements or whether they act together to confer specific functions to the arrest. To address this question, we integrated mathematical models describing the cell cycle and the DNA damage signaling networks and tested the contributions of each mechanism to cell cycle arrest and re-entry. Predictions from this model were then tested with quantitative experiments to identify the combined action of arrest mechanisms in irradiated cells. We find that different arrest mechanisms serve indispensable roles in the proper cellular response to DNA damage over time: p53-independent cyclin inactivation confers immediate arrest, whereas p53-dependent cyclin downregulation allows this arrest to be sustained. Additionally, p21-mediated inhibition of cyclin-dependent kinase activity is indispensable for preventing improper cell cycle re-entry and endoreduplication. This work shows that in a complex signaling network, seemingly redundant mechanisms, acting in a concerted fashion, can achieve a specific cellular outcome.
authors.affiliation: Department of Biological Engineering, Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
authors.forename: Jared E
authors.initials: JE
authors.lastname: Toettcher
authors.forename: Alexander
authors.initials: A
authors.lastname: Loewer
authors.forename: Gerard J
authors.initials: GJ
authors.lastname: Ostheimer
authors.forename: Michael B
authors.initials: MB
authors.lastname: Yaffe
authors.forename: Bruce
authors.initials: B
authors.lastname: Tidor
authors.forename: Galit
authors.initials: G
authors.lastname: Lahav
mesh_terms: D002453:Cell Cycle; D050759:Cyclin-Dependent Kinase Inhibitor p21 / Q000502:physiology; D016213:Cyclins / Q000032:analysis; D004249:DNA Damage; D016193:G1 Phase; D016195:G2 Phase; D045325:HCT116 Cells; D006801:Humans; D008954:Models, Biological; D016159:Tumor Suppressor Protein p53 / Q000502:physiology
chemical_list: C493956:CDKN1A protein, human; D050759:Cyclin-Dependent Kinase Inhibitor p21; D016213:Cyclins; D016159:Tumor Suppressor Protein p53