title: Symbiobacterium lost carbonic anhydrase in the course of evolution.
abstract: Recent genetic studies have elucidated that carbonic anhydrase (CA; EC 4.2.1.1), a ubiquitous enzyme catalyzing interconversion between CO(2) and bicarbonate, is essential for microbial growth under ambient air but not under high-CO(2) air. The irregular distribution of the phylogenetically distinct types of CA in the prokaryotic genome suggests its complex evolutionary history in prokaryotes. This paper deals with the genetic defect of CA in Symbiobacterium thermophilum, a syntrophic bacterium that effectively grows on CO(2) generated by other bacteria. Phylogenetic analysis based on 31 ribosomal protein sequences demonstrated the affiliation of Symbiobacterium with the class Clostridia with 100% bootstrap support. The phylogeny of beta- and gamma-type CA distributed among Clostridia supported the view that S. thermophilum and several related organisms lost this enzyme during the course of evolution. The loss of CA could be based on the availability of a high level of CO(2) in their living environments.
authors.affiliation: Agricultural Bioinformatics Research Unit, Graduate School of Agriculture and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, 113-8657, Japan.
authors.forename: Hiromi
authors.initials: H
authors.lastname: Nishida
authors.forename: Teruhiko
authors.initials: T
authors.lastname: Beppu
authors.forename: Kenji
authors.initials: K
authors.lastname: Ueda
mesh_terms: D001639:Bicarbonates / Q000378:metabolism; D002245:Carbon Dioxide / Q000378:metabolism; D002256:Carbonic Anhydrases / Q000235:genetics*; D003013:Clostridium / Q000201:enzymology* / Q000235:genetics; D019143:Evolution, Molecular; D010802:Phylogeny; D013559:Symbiosis / Q000502:physiology
chemical_list: D001639:Bicarbonates; D002245:Carbon Dioxide; D002256:Carbonic Anhydrases