title: Classification of select category A and B bacteria by Fourier transform infrared spectroscopy.
abstract: Fourier transform infrared (FT-IR) spectroscopy historically is a powerful tool for the taxonomic classification of bacteria by genus, species, and strain when they are grown under carefully controlled conditions. Relatively few reports have investigated the determination and classification of pathogens such as the National Institute of Allergy and Infectious Diseases (NIAID) Category A Bacillus anthracis spores and cells (BA), Yersinia species, Francisella tularensis (FT), and Category B Brucella species from FT-IR spectra. We investigated the multivariate statistics classification ability of the FT-IR spectra of viable pathogenic and non-pathogenic NIAID Category A and B bacteria. The impact of different growth media, growth time and temperature, rolling circle filter of the data, and wavelength range were investigated for their microorganism differentiation capability. Viability of the bacteria was confirmed by agar plate growth after the FT-IR experimental procedures were performed. Principal component analysis (PCA) was reduced to maps of two PC vectors in order to distill the FT-IR spectral features into manageable, visual presentations. The PCA results of the strains of BA, FT, Brucella, and Yersinia spectra from conditions of varying growth media and culture time were readily separable in two-dimensional (2D) PC plots. FT spectra were separated from those of the three other genera. The BA pathogenic spore strains 1029, LA1, and Ames were clearly differentiated from the rest of the dataset. Yersinia rhodei, Y. enterocolitica, and Y. pestis species were distinctly separated from the remaining dataset and could also be classified by growth media. Different growth media produced distinct subsets in the FT, BA, and Yersinia spp. regions in the 2D PC plots. Various 2D PC plots provided differential degrees of separation with respect to the four viable bacterial genera including the BA sub-categories of pathogenic spores, vegetative cells, and nonpathogenic vegetative cells. This work provided evidence that FT-IR spectroscopy can indeed separate the four major pathogenic bacterial genera of NIAID Category A and B biological threat agents including details according to the growth conditions and statistical parameters.
authors.affiliation: ECBC, Research and Technology Directorate, Edgewood Area, Aberdeen Proving Ground, Maryland 21010-5424, USA.
authors.forename: Alan C
authors.initials: AC
authors.lastname: Samuels
authors.forename: A Peter
authors.initials: AP
authors.lastname: Snyder
authors.forename: Darren K
authors.initials: DK
authors.lastname: Emge
authors.forename: Diane
authors.initials: D
authors.lastname: Amant
authors.forename: Jennifer
authors.initials: J
authors.lastname: Minter
authors.forename: Mark
authors.initials: M
authors.lastname: Campbell
authors.forename: Ashish
authors.initials: A
authors.lastname: Tripathi
mesh_terms: D001408:Bacillus anthracis / Q000737:chemistry / Q000145:classification / Q000254:growth & development; D001419:Bacteria / Q000737:chemistry* / Q000145:classification* / Q000254:growth & development; D015373:Bacterial Typing Techniques / Q000379:methods*; D002002:Brucella / Q000737:chemistry / Q000145:classification / Q000254:growth & development; D003470:Culture Media; D005604:Francisella tularensis / Q000737:chemistry / Q000145:classification / Q000254:growth & development; D007091:Image Processing, Computer-Assisted; D015999:Multivariate Analysis; D025341:Principal Component Analysis; D017550:Spectroscopy, Fourier Transform Infrared; D013171:Spores, Bacterial / Q000737:chemistry; D013696:Temperature; D013997:Time Factors; D015007:Yersinia / Q000737:chemistry / Q000145:classification / Q000254:growth & development
chemical_list: D003470:Culture Media