NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results.
NOBLAST (New Options for BLAST) is an open source program that provides a new user-friendly tabular output format for various NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn, Tblastx, Mega BLAST and Psi BLAST) without any use of a parser and provides E-value correction in case of use of segmented BLAST database. JAMBLAST using the NOBLAST output allows the user to manage, view and filter the BLAST hits using a number of selection criteria.


BACKGROUND
A distribution package of NOBLAST and JAMBLAST including detailed installation procedure is freely available from http://sourceforge.net/projects/JAMBLAST/ and http://sourceforge.net/projects/NOBLAST.


BACKGROUND
Supplementary data are available at Bioinformatics online.
Lagnel
Jacques
J
Institute of Marine Biology and Genetics, Hellenic Centre for Marine Research, Heraklion 71003, Crete, Greece. lagnel@her.hcmr.gr
Tsigenopoulos
Costas S
CS
Iliopoulos
Ioannis
I
D019295:Computational Biology / Q000379:methods*; D020407:Internet; D011381:Programming Languages; D016415:Sequence Alignment / Q000379:methods*; D020539:Sequence Analysis, Protein / Q000379:methods; D012984:Software