title: FrameDP: sensitive peptide detection on noisy matured sequences.
abstract: CONCLUSIONS
  Transcriptome sequencing represents a fundamental source of information for genome-wide studies and transcriptome analysis and will become increasingly important for expression analysis as new sequencing technologies takes over array technology. The identification of the protein-coding region in transcript sequences is a prerequisite for systematic amino acid-level analysis and more specifically for domain identification. In this article, we present FrameDP, a self-training integrative pipeline for predicting CDS in transcripts which can adapt itself to different levels of sequence qualities.
  
  
  BACKGROUND
  FrameDP for Linux (web-server and underlying pipeline) is available at {{http://iant.toulouse.inra.fr/FrameDP}} for direct use or a standalone installation.
authors.affiliation: Laboratoire Interactions Plantes Micro-organismes (LIPM) UMR441/2594, INRA/CNRS, F-31320 Castanet Tolosan, France.
authors.forename: Jérôme
authors.initials: J
authors.lastname: Gouzy
authors.forename: Sébastien
authors.initials: S
authors.lastname: Carrere
authors.forename: Thomas
authors.initials: T
authors.lastname: Schiex
mesh_terms: D020869:Gene Expression Profiling; D020407:Internet; D010455:Peptides / Q000737:chemistry*; D020539:Sequence Analysis, Protein / Q000379:methods*; D012984:Software
chemical_list: D010455:Peptides