Production of random DNA oligomers for scalable DNA computing.
While remarkably complex networks of connected DNA molecules can form from a relatively small number of distinct oligomer strands, a large computational space created by DNA reactions would ultimately require the use of many distinct DNA strands. The automatic synthesis of this many distinct strands is economically prohibitive. We present here a new approach to producing distinct DNA oligomers based on the polymerase chain reaction (PCR) amplification of a few random template sequences. As an example, we designed a DNA template sequence consisting of a 50-mer random DNA segment flanked by two 20-mer invariant primer sequences. Amplification of a dilute sample containing about 30 different template molecules allows us to obtain around 10(11) copies of these molecules and their complements. We demonstrate the use of these amplicons to implement some of the vector operations that will be required in a DNA implementation of an analog neural network.
Wang
Sixue S L
SS
University of California, Riverside, CA 92521, USA.
Johnson
John J X
JJ
Hughes
Bradley S T
BS
Karabay
Dundar A O
DA
Bader
Karson D W
KD
Austin
Allen
A
Austin
Alan
A
Habib
Aisha
A
Hatef
Husnia
H
Joshi
Megha
M
Nguyen
Lawrence
L
Mills
Allen P
AP
D039301:Computers, Molecular; D004247:DNA / Q000737:chemistry / Q000235:genetics; D017931:DNA Primers; D004277:DNA, Single-Stranded; D004591:Electrophoresis, Polyacrylamide Gel; D005822:Genetic Vectors; D009838:Oligodeoxyribonucleotides / Q000737:chemistry; D016133:Polymerase Chain Reaction; D017422:Sequence Analysis, DNA
D017931:DNA Primers; D004277:DNA, Single-Stranded; D009838:Oligodeoxyribonucleotides; D004247:DNA