Optimal experimental design with the sigma point method.
Using mathematical models for a quantitative description of dynamical systems requires the identification of uncertain parameters by minimising the difference between simulation and measurement. Owing to the measurement noise also, the estimated parameters possess an uncertainty expressed by their variances. To obtain highly predictive models, very precise parameters are needed. The optimal experimental design (OED) as a numerical optimisation method is used to reduce the parameter uncertainty by minimising the parameter variances iteratively. A frequently applied method to define a cost function for OED is based on the inverse of the Fisher information matrix. The application of this traditional method has at least two shortcomings for models that are nonlinear in their parameters: (i) it gives only a lower bound of the parameter variances and (ii) the bias of the estimator is neglected. Here, the authors show that by applying the sigma point (SP) method a better approximation of characteristic values of the parameter statistics can be obtained, which has a direct benefit on OED. An additional advantage of the SP method is that it can also be used to investigate the influence of the parameter uncertainties on the simulation results. The SP method is demonstrated for the example of a widely used biological model.
Schenkendorf
R
R
Max-Planck-Institute for Dynamics of Complex Technical Systems, Magdeburg, Germany. rschenke@mpi-magdeburg.mpg.de
Kremling
A
A
Mangold
M
M
D000465:Algorithms; D019149:Bioreactors; D003198:Computer Simulation; D016001:Confidence Intervals; D007700:Kinetics; D008954:Models, Biological; D009010:Monte Carlo Method; D012107:Research Design; D049490:Systems Biology / Q000379:methods*