title: Understanding the plasticity of the alpha/beta hydrolase fold: lid swapping on the Candida antarctica lipase B results in chimeras with interesting biocatalytic properties.
abstract: The best of both worlds. Long molecular dynamics (MD) simulations of Candida antarctica lipase B (CALB) confirmed the function of helix alpha5 as a lid structure. Replacement of the helix with corresponding lid regions from CALB homologues from Neurospora crassa and Gibberella zeae resulted in new CALB chimeras with novel biocatalytic properties. The figure shows a snapshot from the MD simulation. The Candida antarctica lipase B (CALB) has found very extensive use in biocatalysis reactions. Long molecular dynamics simulations of CALB in explicit aqueous solvent confirmed the high mobility of the regions lining the channel that leads into the active site, in particular, of helices alpha5 and alpha10. The simulation also confirmed the function of helix alpha5 as a lid of the lipase. Replacing it with corresponding lid regions from the CALB homologues from Neurospora crassa and Gibberella zeae resulted in two new CALB mutants. Characterization of these revealed several interesting properties, including increased hydrolytic activity on simple esters, specifically substrates with C(alpha) branching on the carboxylic side, and much increased enantioselectivity in hydrolysis of racemic ethyl 2-phenylpropanoate (E>50), which is a common structure of the profen drug family.
authors.affiliation: Department of Protein Design, Novozymes A/S, Bagsvaerd, Denmark.
authors.forename: Michael
authors.initials: M
authors.lastname: Skjøt
authors.forename: Leonardo
authors.initials: L
authors.lastname: De Maria
authors.forename: Robin
authors.initials: R
authors.lastname: Chatterjee
authors.forename: Allan
authors.initials: A
authors.lastname: Svendsen
authors.forename: Shamkant A
authors.initials: SA
authors.lastname: Patkar
authors.forename: Peter R
authors.initials: PR
authors.lastname: Ostergaard
authors.forename: Jesper
authors.initials: J
authors.lastname: Brask
mesh_terms: D000595:Amino Acid Sequence; D055162:Biocatalysis; D005656:Fungal Proteins; D008049:Lipase / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D008958:Models, Molecular; D008969:Molecular Sequence Data; D015394:Molecular Structure; D015202:Protein Engineering; D017510:Protein Folding; D017433:Protein Structure, Secondary; D011994:Recombinant Proteins / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D016415:Sequence Alignment; D017386:Sequence Homology, Amino Acid
chemical_list: D005656:Fungal Proteins; D011994:Recombinant Proteins; D008049:Lipase; C431349:lipase B, Candida antarctica