Systems biology metabolic modeling assistant: an ontology-based tool for the integration of metabolic data in kinetic modeling.
CONCLUSIONS
We present Systems Biology Metabolic Modeling Assistant (SBMM Assistant), a tool built using an ontology-based mediator, and designed to facilitate metabolic modeling through the integration of data from repositories that contain valuable metabolic information. This software can be used for the visualization, design and management of metabolic networks; selection, integration and storage of metabolic information; and as an assistant for kinetic modeling.


BACKGROUND
SBMM Assistant for academic use is freely available at http://www.sbmm.uma.es.
Reyes-Palomares
Armando
A
Department of Molecular Biology and Biochemistry and unit 741 of CIBER de Enfermedades Raras, Campus de Teatinos, University of Malaga, 29071, Spain.
Montañez
Raul
R
Real-Chicharro
Alejando
A
Chniber
Othmane
O
Kerzazi
Amine
A
Navas-Delgado
Ismael
I
Medina
Miguel Angel
MA
Aldana-Montes
José F
JF
Sánchez-Jiménez
Francisca
F
D019295:Computational Biology / Q000379:methods*; D007700:Kinetics; D053858:Metabolic Networks and Pathways; D008954:Models, Biological; D012984:Software; D049490:Systems Biology / Q000379:methods*