title: Paramagnetic 13C and 15N NMR analyses of cyanide- (13C15N-) ligated ferric peroxidases: the push effect, not pull effect, modulates the compound I formation rate.
abstract: Paramagnetic (13)C and (15)N NMR spectroscopy of heme-bound cyanide ((13)C(15)N) was utilized to quantitatively distinguish the electron donor effect (the push effect) from the proximal histidine and hydrogen-bonding effect (the pull effect) from the distal amino acid residues in cytochrome c peroxidase (CcP), ascorbate peroxidase (APX), lignin peroxidase (LiP), and manganese peroxidase (MnP). Paramagnetic (13)C NMR signals of heme-bound (13)C(15)N of these peroxidases were observed in a wide range, -3501 ppm (CcP), -3563 ppm (APX), -3823 ppm (MnP), and -3826 ppm (LiP), while paramagnetic (15)N NMR signals of those were detected in a narrow range, 574 ppm (ARP), 605 ppm (CcP), 626 ppm (LiP), and 654 ppm (MnP). Detailed analysis, combined with the previous results for horseradish peroxidase and Arthromyces ramosus peroxidase, indicated that the push effect is quite different among these peroxidases while the pull effect is similar. More importantly, a strong correlation between the (13)C NMR shift (the push effect) and the compound I formation rate was observed, indicating that the push effect causes a variation in the compound I formation rate. Comparison of the (13)C and (15)N NMR results of these peroxidases with their crystal structures suggests that the orientation of the proximal imidazole plane to the heme N-Fe-N axis controls the push effect and the compound I formation rate of peroxidase.
authors.affiliation: Faculty of Agriculture, Kyushu University, Hakozaki, Fukuoka 812-8581, Japan.
authors.forename: Daisuke
authors.initials: D
authors.lastname: Nonaka
authors.forename: Hiroyuki
authors.initials: H
authors.lastname: Wariishi
authors.forename: Hiroshi
authors.initials: H
authors.lastname: Fujii
mesh_terms: D002247:Carbon Isotopes; D018360:Crystallography, X-Ray; D003486:Cyanides / Q000032:analysis* / Q000737:chemistry; D004578:Electron Spin Resonance Spectroscopy; D005290:Ferric Compounds / Q000032:analysis* / Q000737:chemistry; D006735:Horseradish Peroxidase / Q000032:analysis* / Q000737:chemistry / Q000378:metabolism*; D006861:Hydrogen Peroxide / Q000737:chemistry / Q000378:metabolism; D008024:Ligands; D009587:Nitrogen Isotopes; D019906:Nuclear Magnetic Resonance, Biomolecular
chemical_list: D002247:Carbon Isotopes; D003486:Cyanides; D005290:Ferric Compounds; D008024:Ligands; D009587:Nitrogen Isotopes; D006861:Hydrogen Peroxide; D006735:Horseradish Peroxidase