title: Phylogeny of Bromelioideae (Bromeliaceae) inferred from nuclear and plastid DNA loci reveals the evolution of the tank habit within the subfamily.
abstract: Phylogenetic relationships within subfamily Bromelioideae (Bromeliaceae, Poales) were inferred using DNA sequence data from the low-copy nuclear gene phosphoribulokinase (PRK) and five plastid loci (matK gene, 3'trnK intron, trnL intron, trnL-trnF spacer, atpB-rbcL spacer). The PRK dataset exhibited a considerably higher proportion of potentially informative characters than the plastid dataset (16.9% vs. 3.1%), leading to a higher resolution and improved nodal support of the resulting phylogenies. Bromelia is resolved as sister to the remainder of the subfamily, albeit this relationship receives only weak nodal support. The basal position of Bromelia, as well as Deinacanthon, Greigia, Ochagavia, Fascicularia and Fernseea within the subfamily is corroborated and the remainder of the subfamily forms a highly supported clade (the eu-bromelioids). By the inclusion of nuclear data the sister group position of Fernseea to the eu-bromelioids is now highly supported. Within the eu-bromelioids the resolution of the clade representing the more advanced core bromelioids has increased and further demonstrates the highly problematic generic concept of Aechmea as well as Quesnelia. Moreover, the data were used to examine the evolution of sepal symmetry and the tank habit. Tracing of character transitions onto the molecular phylogeny implies that both characters have undergone only few transitions within the subfamily and thus are not as homoplasious as previously assumed. The character state reconstruction reveals the great importance of the evolution of the tank habit for the diversification of the core bromelioids.
authors.affiliation: Abteilung Botanik und molekulare Evolutionsforschung, Forschungsinstitut Senckenberg & Goethe-Universität Frankfurt am Main, Frankfurt am Main, Germany.
authors.forename: Katharina
authors.initials: K
authors.lastname: Schulte
authors.forename: Michael H J
authors.initials: MH
authors.lastname: Barfuss
authors.forename: Georg
authors.initials: G
authors.lastname: Zizka
mesh_terms: D031229:Bromeliaceae / Q000033:anatomy & histology / Q000145:classification / Q000235:genetics*; D002467:Cell Nucleus / Q000235:genetics; D018744:DNA, Plant / Q000235:genetics; D019143:Evolution, Molecular; D035264:Flowers / Q000033:anatomy & histology; D017343:Genes, Plant; D005819:Genetic Markers; D014644:Genetic Variation; D017853:Phosphotransferases (Alcohol Group Acceptor) / Q000235:genetics; D010802:Phylogeny; D010940:Plant Proteins / Q000235:genetics; D018087:Plastids / Q000235:genetics; D016415:Sequence Alignment; D017422:Sequence Analysis, DNA
chemical_list: D018744:DNA, Plant; D005819:Genetic Markers; D010940:Plant Proteins; D017853:Phosphotransferases (Alcohol Group Acceptor); C022390:phosphoribulokinase