title: Insights into the translational regulation of biologically active open reading frames of Pelargonium line pattern virus.
abstract: Pelargonium line pattern virus (PLPV), a proposed member of a prospective genus (Pelarspovirus) within family Tombusviridae, has a positive-sense, single-stranded genomic RNA. According to previous predictions, it contains six open reading frames (ORFs) potentially encoding proteins of 27 (p27), 13 (p13), 87 (p87), 7 (p7), 6 (p6), and 37 kDa (p37). Using a variety of techniques we demonstrate that all predicted ORFs are functional, with the exception of (p13) and (p6). We also characterize a previously unidentified ORF which encodes a 9.7 kDa protein (p9.7) that is essential for viral movement. Furthermore, we present evidence that the single subgenomic RNA (sgRNA) produced by the virus directs synthesis of p7, p9.7 and p37. Remarkably, the translation of these totally unrelated proteins is coordinated via leaky-scanning. This mechanism seems to be favoured by the poor translation context of the start codon of ORF(p7), the non-AUG weak initiation codon of ORF(p9.7) and the lack of additional AUG codons in any reading frame preceding ORF(p37). The results also suggest that precise regulation of protein production from the sgRNA is critical for virus viability. Altogether, the data supports the notion that PLPV belongs to a new genus of plant viruses.
authors.affiliation: Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas-UPV), Campus Universidad Politécnica de Valencia, Avenida de los Naranjos, 46022 Valencia, Spain.
authors.forename: Aurora
authors.initials: A
authors.lastname: Castaño
authors.forename: Leticia
authors.initials: L
authors.lastname: Ruiz
authors.forename: Carmen
authors.initials: C
authors.lastname: Hernández
mesh_terms: D018387:Codon, Initiator; D015967:Gene Expression Regulation, Viral; D016679:Genome, Viral; D009154:Mutation; D016366:Open Reading Frames; D031316:Pelargonium / Q000821:virology*; D014176:Protein Biosynthesis; D012367:RNA, Viral / Q000378:metabolism; D017423:Sequence Analysis, RNA; D019183:Tombusviridae / Q000145:classification / Q000235:genetics* / Q000378:metabolism; D014764:Viral Proteins / Q000235:genetics; D058727:RNA, Small Untranslated
chemical_list: D018387:Codon, Initiator; D012367:RNA, Viral; D014764:Viral Proteins; D058727:RNA, Small Untranslated