Structural and functional consequences of the substitution of glycine 65 with arginine in the N-lobe of human transferrin.
The G65R mutation in the N-lobe of human transferrin was created to mimic a naturally occurring variant (G394R) found in the homologous C-lobe. Because Gly65 is hydrogen-bonded to the iron-binding ligand Asp63, it comprises part of the second-shell hydrogen bond network surrounding the iron within the metal-binding cleft of the protein. Substitution with an arginine residue at this position disrupts the network, resulting in much more facile removal of iron from the G65R mutant. As shown by UV-vis and EPR spectroscopy, and by kinetic assays measuring the release of iron, the G65R mutant can exist in three forms. Two of the forms (yellow and pink in color) are interconvertible. The yellow form predominates in 1 M bicarbonate; the pink form is generated from the yellow form upon exchange into 1 M HEPES buffer (pH 7.4). The third form (also pink in color) is produced by the addition of Fe(3+)-(nitrilotriacetate)(2) to apo-G65R. Hydrogen-deuterium exchange experiments are consistent with all forms of the G65R mutant assuming a more open conformation. Additionally, mass spectrometric analysis reveals the presence of nitrilotriacetate in the third form. The inability to obtain crystals of the G65R mutant led to development of a novel crystallization strategy in which the G65R/K206E double mutation stabilizes a single closed pink conformer and captures Arg65 in a single position. Collectively, these studies highlight the importance of the hydrogen bond network in the cleft, as well as the inherent flexibility of the N-lobe which, although able to adapt to accommodate the large arginine substitution, exists in multiple conformations.
Mason
Anne B
AB
Department of Biochemistry, University of Vermont College of Medicine, Burlington, Vermont 05405, USA. anne.mason@uvm.edu
Halbrooks
Peter J
PJ
James
Nicholas G
NG
Byrne
Shaina L
SL
Grady
John K
JK
Chasteen
N Dennis
ND
Bobst
Cedric E
CE
Kaltashov
Igor A
IA
Smith
Valerie C
VC
MacGillivray
Ross T A
RT
Everse
Stephen J
SJ
D019943:Amino Acid Substitution; D001120:Arginine / Q000235:genetics; D001639:Bicarbonates / Q000737:chemistry; D001665:Binding Sites / Q000235:genetics; D018360:Crystallography, X-Ray; D041961:Deuterium Exchange Measurement; D004578:Electron Spin Resonance Spectroscopy; D005998:Glycine / Q000235:genetics; D006531:HEPES / Q000737:chemistry; D006801:Humans; D006860:Hydrogen Bonding; D007501:Iron / Q000737:chemistry / Q000378:metabolism; D007700:Kinetics; D008024:Ligands; D008958:Models, Molecular; D009571:Nitrilotriacetic Acid / Q000737:chemistry; D011487:Protein Conformation; D021241:Spectrometry, Mass, Electrospray Ionization; D013056:Spectrophotometry, Ultraviolet; D014168:Transferrin / Q000737:chemistry* / Q000235:genetics*
D001639:Bicarbonates; D008024:Ligands; D014168:Transferrin; D001120:Arginine; D007501:Iron; D009571:Nitrilotriacetic Acid; D006531:HEPES; D005998:Glycine