Manual annotation, transcriptional analysis, and protein expression studies reveal novel genes in the agl cluster responsible for N glycosylation in the halophilic archaeon Haloferax volcanii.
While Eukarya, Bacteria, and Archaea are all capable of protein N glycosylation, the archaeal version of this posttranslational modification is the least understood. To redress this imbalance, recent studies of the halophilic archaeon Haloferax volcanii have identified a gene cluster encoding the Agl proteins involved in the assembly and attachment of a pentasaccharide to select Asn residues of the surface layer glycoprotein in this species. However, because the automated tools used for rapid annotation of genome sequences, including that of H. volcanii, are not always accurate, a reannotation of the agl cluster was undertaken in order to discover genes not previously recognized. In the present report, reanalysis of the gene cluster that includes aglB, aglE, aglF, aglG, aglI, and aglJ, which are known components of the H. volcanii protein N-glycosylation machinery, was undertaken. Using computer-based tools or visual inspection, together with transcriptional analysis and protein expression approaches, genes encoding AglP, AglQ, and AglR are now described.
Yurist-Doutsch
Sophie
S
Dept. of Life Sciences, Ben Gurion University, P.O. Box 653, Beersheva 84105, Israel.
Eichler
Jerry
J
D019843:Archaeal Proteins / Q000096:biosynthesis; D019295:Computational Biology; D019641:DNA, Archaeal / Q000737:chemistry / Q000235:genetics; D023061:Gene Order; D019766:Genes, Archaeal; D006031:Glycosylation; D019622:Haloferax volcanii / Q000235:genetics* / Q000378:metabolism*; D008969:Molecular Sequence Data; D005810:Multigene Family; D012333:RNA, Messenger / Q000096:biosynthesis; D017422:Sequence Analysis, DNA; D014158:Transcription, Genetic
D019843:Archaeal Proteins; D019641:DNA, Archaeal; D012333:RNA, Messenger