Dynamics of antibody domains studied by solution NMR.
Information on local dynamics of antibodies is important to evaluate stability, to rationally design variants, and to clarify conformational disorders at the epitope binding sites. Such information may also be useful for improved understanding of antigen recognition. NMR can be used for characterization of local protein dynamics at the atomic level through relaxation measurements. Due to the complexity of the NMR spectra, an extensive use of this method is limited to small protein molecules, for example, antibody domains and some scFv. Here, we describe a protocol that was used to study the dynamics of an antibody domain in solution using NMR. We describe protein preparation for NMR studies, NMR sample optimization, signal assignments, and dynamics experiments.
Vu
Bang K
BK
NCI-Frederick, National Institutes of Health, Frederick, MD, USA.
Walsh
Joseph D
JD
Dimitrov
Dimiter S
DS
Ishima
Rieko
R
D000906:Antibodies / Q000737:chemistry*; D006863:Hydrogen-Ion Concentration; D009682:Magnetic Resonance Spectroscopy / Q000379:methods*; D017434:Protein Structure, Tertiary; D012996:Solutions
D000906:Antibodies; D012996:Solutions