Subdiffusion and lateral diffusion coefficient of lipid atoms and molecules in phospholipid bilayers.
We use a long, all-atom molecular-dynamics (MD) simulation combined with theoretical modeling to investigate the dynamics of selected lipid atoms and lipid molecules in a hydrated diyristoyl-phosphatidylcholine lipid bilayer. From the analysis of a 0.1 micros MD trajectory, we find that the time evolution of the mean-square displacement, <[deltar(t)]2>, of lipid atoms and molecules exhibits three well-separated dynamical regions: (i) ballistic, with <[deltar(t)]2> approximately t2 for t<or approximately 10 fs; (ii) subdiffusive, with <[deltar(t)]2> approximately tbeta with beta<1 for 10 ps<or approximately t<or approximately 10 ns; and (iii) Fickian diffusion, with <[deltar(t)]2> approximately t for t>or approximately 30 ns. We propose a memory-function approach for calculating <[deltar(t)]2> over the entire time range extending from the ballistic to the Fickian diffusion regimes. The results are in very good agreement with the ones from the MD simulations. We also examine the implications of the presence of the subdiffusive dynamics of lipids on the self-intermediate scattering function and the incoherent dynamic structure factor measured in neutron-scattering experiments.
Flenner
Elijah
E
Department of Physics and Astronomy, University of Missouri-Columbia, Columbia, Missouri 65211, USA.
Das
Jhuma
J
Rheinstädter
Maikel C
MC
Kosztin
Ioan
I
D003198:Computer Simulation; D004058:Diffusion; D004134:Dimyristoylphosphatidylcholine / Q000737:chemistry; D006859:Hydrogen / Q000737:chemistry; D008051:Lipid Bilayers / Q000737:chemistry*; D008958:Models, Molecular; D033363:Neutron Diffraction; D010743:Phospholipids / Q000737:chemistry*; D013997:Time Factors
D008051:Lipid Bilayers; D010743:Phospholipids; D006859:Hydrogen; D004134:Dimyristoylphosphatidylcholine