Infernal 1.0: inference of RNA alignments.
CONCLUSIONS
INFERNAL builds consensus RNA secondary structure profiles called covariance models (CMs), and uses them to search nucleic acid sequence databases for homologous RNAs, or to create new sequence- and structure-based multiple sequence alignments.


BACKGROUND
Source code, documentation and benchmark downloadable from http://infernal.janelia.org. INFERNAL is freely licensed under the GNU GPLv3 and should be portable to any POSIX-compliant operating system, including Linux and Mac OS/X.
Nawrocki
Eric P
EP
HHMI Janelia Farm Research Campus, Ashburn, VA 20147, USA. nawrockie@janelia.hhmi.org
Kolbe
Diana L
DL
Eddy
Sean R
SR
D030561:Databases, Nucleic Acid; D009690:Nucleic Acid Conformation; D012313:RNA / Q000737:chemistry*; D016415:Sequence Alignment / Q000379:methods*; D017423:Sequence Analysis, RNA; D012984:Software
D012313:RNA