PDB Editor: a user-friendly Java-based Protein Data Bank file editor with a GUI.
The Protein Data Bank file format is the format most widely used by protein crystallographers and biologists to disseminate and manipulate protein structures. Despite this, there are few user-friendly software packages available to efficiently edit and extract raw information from PDB files. This limitation often leads to many protein crystallographers wasting significant time manually editing PDB files. PDB Editor, written in Java Swing GUI, allows the user to selectively search, select, extract and edit information in parallel. Furthermore, the program is a stand-alone application written in Java which frees users from the hassles associated with platform/operating system-dependent installation and usage. PDB Editor can be downloaded from http://sourceforge.net/projects/pdbeditorjl/.
Lee
Jonas
J
Department of Chemistry, University of California, Berkeley, California 94720-5230, USA.
Kim
Sung Hou
SH
D003196:Computer Graphics; D018360:Crystallography, X-Ray; D030562:Databases, Protein; D020407:Internet; D011381:Programming Languages; D011487:Protein Conformation; D014584:User-Computer Interface