title: Infernal 1.0: inference of RNA alignments.
abstract: CONCLUSIONS
  INFERNAL builds consensus RNA secondary structure profiles called covariance models (CMs), and uses them to search nucleic acid sequence databases for homologous RNAs, or to create new sequence- and structure-based multiple sequence alignments.
  
  
  BACKGROUND
  Source code, documentation and benchmark downloadable from http://infernal.janelia.org. INFERNAL is freely licensed under the GNU GPLv3 and should be portable to any POSIX-compliant operating system, including Linux and Mac OS/X.
authors.affiliation: HHMI Janelia Farm Research Campus, Ashburn, VA 20147, USA. nawrockie@janelia.hhmi.org
authors.forename: Eric P
authors.initials: EP
authors.lastname: Nawrocki
authors.forename: Diana L
authors.initials: DL
authors.lastname: Kolbe
authors.forename: Sean R
authors.initials: SR
authors.lastname: Eddy
mesh_terms: D030561:Databases, Nucleic Acid; D009690:Nucleic Acid Conformation; D012313:RNA / Q000737:chemistry*; D016415:Sequence Alignment / Q000379:methods*; D017423:Sequence Analysis, RNA; D012984:Software
chemical_list: D012313:RNA