title: GetBonNie for building, analyzing and sharing rule-based models.
abstract: CONCLUSIONS
  GetBonNie is a web-based application for building, analyzing and sharing rule-based models encoded in the BioNetGen language (BNGL). Tools accessible within the GetBonNie environment include (i) an applet for drawing graphs that correspond to BNGL code; (ii) a network-generation engine for translating a set of rules into a chemical reaction network; (iii) simulation engines that implement generate-first, on-the-fly and network-free methods for simulating rule-based models; and (iv) a database for sharing models, parameter values, annotations, simulation tasks and results.
  
  
  BACKGROUND
  GetBonNie is free at (http://getbonnie.org).
authors.affiliation: Department of Biology, University of New Mexico, Albuquerque, NM 87131, USA.
authors.forename: Bin
authors.initials: B
authors.lastname: Hu
authors.forename: G
authors.initials: G
authors.lastname: Matthew Fricke
authors.forename: James R
authors.initials: JR
authors.lastname: Faeder
authors.forename: Richard G
authors.initials: RG
authors.lastname: Posner
authors.forename: William S
authors.initials: WS
authors.lastname: Hlavacek