title: Genomic expression profiling across the pediatric systemic inflammatory response syndrome, sepsis, and septic shock spectrum.
abstract: OBJECTIVE
  To advance our biological understanding of pediatric septic shock, we measured the genome-level expression profiles of critically ill children representing the systemic inflammatory response syndrome (SIRS), sepsis, and septic shock spectrum.
  
  
  METHODS
  Prospective observational study involving microarray-based bioinformatics.
  
  
  METHODS
  Multiple pediatric intensive care units in the United States.
  
  
  METHODS
  Children <or=10 years of age: 18 normal controls, 22 meeting criteria for SIRS, 32 meeting criteria for sepsis, and 67 meeting criteria for septic shock on day 1. The available day 3 samples included 20 patients still meeting sepsis criteria, 39 patients still meeting septic shock criteria, and 24 patients meeting the exclusive day 3 category, SIRS resolved.
  
  
  METHODS
  None other than standard care.
  
  
  RESULTS
  Longitudinal analyses were focused on gene expression relative to control samples and patients having paired day 1 and day 3 samples. The longitudinal analysis focused on up-regulated genes revealed common patterns of up-regulated gene expression, primarily corresponding to inflammation and innate immunity, across all patient groups on day 1. These patterns of up-regulated gene expression persisted on day 3 in patients with septic shock, but not to the same degree in the other patient classes. The longitudinal analysis focused on down-regulated genes demonstrated gene repression corresponding to adaptive immunity-specific signaling pathways and was most prominent in patients with septic shock on days 1 and 3. Gene network analyses based on direct comparisons across the SIRS, sepsis, and septic shock spectrum, and all available patients in the database, demonstrated unique repression of gene networks in patients with septic shock corresponding to major histocompatibility complex antigen presentation. Finally, analyses focused on repression of genes corresponding to zinc-related biology demonstrated that this pattern of gene repression is unique to patients with septic shock.
  
  
  CONCLUSIONS
  Although some common patterns of gene expression exist across the pediatric SIRS, sepsis, and septic shock spectrum, septic shock is particularly characterized by repression of genes corresponding to adaptive immunity and zinc-related biology.
authors.affiliation: Department of Pediatrics, Cincinnati Children's Hospital Medical Center and Cincinnati Children's Research Foundation, University of Cincinnati College of Medicine, Cincinnati, OH, USA. hector.wong@cchmc.org
authors.forename: Hector R
authors.initials: HR
authors.lastname: Wong
authors.forename: Natalie
authors.initials: N
authors.lastname: Cvijanovich
authors.forename: Geoffrey L
authors.initials: GL
authors.lastname: Allen
authors.forename: Richard
authors.initials: R
authors.lastname: Lin
authors.forename: Nick
authors.initials: N
authors.lastname: Anas
authors.forename: Keith
authors.initials: K
authors.lastname: Meyer
authors.forename: Robert J
authors.initials: RJ
authors.lastname: Freishtat
authors.forename: Marie
authors.initials: M
authors.lastname: Monaco
authors.forename: Kelli
authors.initials: K
authors.lastname: Odoms
authors.forename: Bhuvaneswari
authors.initials: B
authors.lastname: Sakthivel
authors.forename: Thomas P
authors.initials: TP
authors.lastname: Shanley