MySSP: non-stationary evolutionary sequence simulation, including indels.
MySSP is a new program for the simulation of DNA sequence evolution across a phylogenetic tree. Although many programs are available for sequence simulation, MySSP is unique in its inclusion of indels, flexibility in allowing for non-stationary patterns, and output of ancestral sequences. Some of these features can individually be found in existing programs, but have not all have been previously available in a single package.
Rosenberg
Michael S
MS
Center for Evolutionary Functional Genomics and the School of Life Sciences, Arizona State University, Tempe, AZ 85287-4501, USA. msr@asu.edu