Ionization energies of aqueous nucleic acids: photoelectron spectroscopy of pyrimidine nucleosides and ab initio calculations.
Vertical ionization energies of the nucleosides cytidine and deoxythymidine in water, the lowest ones amounting in both cases to 8.3 eV, are obtained from photoelectron spectroscopy measurements in aqueous microjets. Ab initio calculations employing a nonequilibrium polarizable continuum model quantitatively reproduce the experimental spectra and provide molecular interpretation of the individual peaks of the photoelectron spectrum, showing also that lowest ionization originates from the base. Comparison of calculated vertical ionization potentials of pyrimidine bases, nucleosides, and nucleotides in water and in the gas phase underlines the dramatic effect of bulk hydration on the electronic structure. In the gas phase, the presence of sugar and, in particular, of phosphate has a strong effect on the energetics of ionization of the base. Upon bulk hydration, the ionization potential of the base in contrast becomes rather insensitive to the presence of the sugar and phosphate, which indicates a remarkable screening ability of the aqueous solvent. Accurate aqueous-phase vertical ionization potentials provide a significant improvement to the corrected gas-phase values used in the literature and represent important information in assessing the threshold energies for photooxidation and oxidation free energies of solvent-exposed DNA components. Likewise, such energetic data should allow improved assessment of delocalization and charge-hopping mechanisms in DNA ionized by radiation.
Slavícek
Petr
P
Department of Physical Chemistry, Institute of Chemical Technology, Technicka 5, Prague 6, Czech Republic.
Winter
Bernd
B
Faubel
Manfred
M
Bradforth
Stephen E
SE
Jungwirth
Pavel
P
D004247:DNA / Q000737:chemistry; D055664:Electrochemical Techniques; D007477:Ions / Q000737:chemistry; D008958:Models, Molecular; D008962:Models, Theoretical; D009696:Nucleic Acids / Q000737:chemistry; D011741:Pyrimidine Nucleosides / Q000737:chemistry*; D013057:Spectrum Analysis; D014867:Water
D007477:Ions; D009696:Nucleic Acids; D011741:Pyrimidine Nucleosides; D014867:Water; D004247:DNA