The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.
In FANTOM4, an international collaborative research project, we collected a wide range of genome-scale data, including 24 million mRNA 5'-reads (CAGE tags) and microarray expression profiles along a differentiation time course of the human THP-1 cell line and under 52 systematic siRNA perturbations. In addition, data regarding chromatin status derived from ChIP-chip to elucidate the transcriptional regulatory interactions are included. Here we present these data to the research community as an integrated web resource.
Kawaji
Hideya
H
RIKEN Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho Tsurumi-ku Yokohama, Kanagawa, 230-0045 Japan. kawaji@gsc.riken.jp
Severin
Jessica
J
Lizio
Marina
M
Waterhouse
Andrew
A
Katayama
Shintaro
S
Irvine
Katharine M
KM
Hume
David A
DA
Forrest
Alistair R R
AR
Suzuki
Harukazu
H
Carninci
Piero
P
Hayashizaki
Yoshihide
Y
Daub
Carsten O
CO
D000818:Animals; D002843:Chromatin / Q000378:metabolism; D047369:Chromatin Immunoprecipitation / Q000379:methods; D030541:Databases, Genetic; D020869:Gene Expression Profiling; D005786:Gene Expression Regulation; D006801:Humans; D016247:Information Storage and Retrieval / Q000379:methods; D020407:Internet; D035683:MicroRNAs / Q000235:genetics; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods; D012333:RNA, Messenger / Q000235:genetics; D034741:RNA, Small Interfering / Q000235:genetics; D020133:Reverse Transcriptase Polymerase Chain Reaction; D014157:Transcription Factors / Q000235:genetics / Q000378:metabolism; D014158:Transcription, Genetic / Q000235:genetics*; D014584:User-Computer Interface
D002843:Chromatin; D035683:MicroRNAs; D012333:RNA, Messenger; D034741:RNA, Small Interfering; D014157:Transcription Factors