FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions.
EdgeExpressDB is a novel database and set of interfaces for interpreting biological networks and comparing large high-throughput expression datasets that requires minimal development for new data types and search patterns. The FANTOM4 EdgeExpress database http://fantom.gsc.riken.jp/4/edgeexpress summarizes gene expression patterns in the context of alternative promoter structures and regulatory transcription factors and microRNAs using intuitive gene-centric and sub-network views. This is an important resource for gene regulation in acute myeloid leukemia, monocyte/macrophage differentiation and human transcriptional networks.
Severin
Jessica
J
RIKEN Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho Tsurumi-ku Yokohama, Kanagawa, 230-0045 Japan. severin@gsc.riken.jp
Waterhouse
Andrew M
AM
Kawaji
Hideya
H
Lassmann
Timo
T
van Nimwegen
Erik
E
Balwierz
Piotr J
PJ
de Hoon
Michiel Jl
MJ
Hume
David A
DA
Carninci
Piero
P
Hayashizaki
Yoshihide
Y
Suzuki
Harukazu
H
Daub
Carsten O
CO
Forrest
Alistair Rr
AR
D000208:Acute Disease; D002454:Cell Differentiation / Q000235:genetics; D019295:Computational Biology / Q000379:methods / Q000706:statistics & numerical data; D030541:Databases, Genetic; D020869:Gene Expression Profiling / Q000379:methods / Q000706:statistics & numerical data*; D053263:Gene Regulatory Networks / Q000235:genetics*; D023281:Genomics / Q000379:methods / Q000706:statistics & numerical data; D006801:Humans; D020407:Internet; D007951:Leukemia, Myeloid / Q000235:genetics; D035683:MicroRNAs / Q000235:genetics; D011401:Promoter Regions, Genetic / Q000235:genetics; D012984:Software
D035683:MicroRNAs