title: Microbial communities in iron-silica-rich microbial mats at deep-sea hydrothermal fields of the Southern Mariana Trough.
abstract: The abundance, diversity and composition of bacterial and archaeal communities in the microbial mats at deep-sea hydrothermal fields were investigated, using culture-independent 16S rRNA and functional gene analyses combined with mineralogical analysis. Microbial mats were collected at two hydrothermal areas on the ridge of the back-arc spreading centre in the Southern Mariana Trough. Scanning electron microscope and energy dispersive X-ray spectroscopic (SEM-EDS) analyses revealed that the mats were mainly composed of amorphous silica and contained numerous filamentous structures of iron hydroxides. Direct cell counting with SYBR Green I staining showed that the prokaryotic cell densities were more than 10(8) cells g(-1). Quantitative polymerase chain reaction (Q-PCR) analysis revealed that Bacteria are more abundant than Archaea in the microbial communities. Furthermore, zetaproteobacterial cells accounted for 6% and 22% of the prokaryotic cells in each mat estimated by Q-PCR with newly designed primers and TaqMan probe. Phylotypes related to iron-oxidizers, methanotrophs/methylotrophs, ammonia-oxidizers and sulfate-reducers were found in the 16S rRNA gene clone libraries constructed from each mat sample. A variety of unique archaeal 16S rRNA gene phylotypes, several pmoA, dsrAB and archaeal amoA gene phylotypes were also recovered from the microbial mats. Our results provide insights into the diversity and abundance of microbial communities within microbial mats in deep-sea hydrothermal fields.
authors.affiliation: Department of Molecular Biology, Tokyo University of Pharmacy and Life Science, Hachioji, Tokyo 192-0392, Japan.
authors.forename: Shingo
authors.initials: S
authors.lastname: Kato
authors.forename: Chiyori
authors.initials: C
authors.lastname: Kobayashi
authors.forename: Takeshi
authors.initials: T
authors.lastname: Kakegawa
authors.forename: Akihiko
authors.initials: A
authors.lastname: Yamagishi
mesh_terms: D001105:Archaea / Q000145:classification* / Q000235:genetics / Q000378:metabolism; D001419:Bacteria / Q000145:classification* / Q000235:genetics / Q000378:metabolism; D001483:Base Sequence; D044822:Biodiversity; D018441:Biofilms / Q000254:growth & development; D017753:Ecosystem; D007501:Iron / Q000032:analysis*; D008969:Molecular Sequence Data; D010140:Pacific Ocean; D010802:Phylogeny; D016133:Polymerase Chain Reaction; D020560:Proteobacteria / Q000302:isolation & purification; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012623:Seawater / Q000382:microbiology*; D012822:Silicon Dioxide / Q000032:analysis*; D013696:Temperature
chemical_list: D012336:RNA, Ribosomal, 16S; D012822:Silicon Dioxide; D007501:Iron