title: Detection of Francisella piscicida in Atlantic cod (Gadus morhua L) by the loop-mediated isothermal amplification (LAMP) reaction.
abstract: The loop-mediated isothermal amplification (LAMP) reaction was evaluated for its speed and sensitivity in detecting the presence of Francisella piscicida, the causative agent of francisellosis in Atlantic cod (Gadus morhua). Four primer sets, consisting of two outer and two inner, were designed from the groEL gene of the pathogen. The LAMP reaction was optimised at 63 degrees C for 1h using bacterial genomic DNA as the template and the products were visualised under ultra-violet light and analysed by agarose gel electrophoresis. A ladder-like pattern of bands, specific for F. piscicida, was amplified from positive samples. The method was highly specific for the detection of F. piscicida and was 100 times more sensitive than conventional PCR. In addition, the LAMP assay was able to detect the pathogen in kidney and splenic samples of naturally-infected Atlantic cod.
authors.affiliation: Faculty of Biosciences and Aquaculture, Bodø University College, Bodø 8049, Norway.
authors.forename: Christopher M A
authors.initials: CM
authors.lastname: Caipang
authors.forename: Amod
authors.initials: A
authors.lastname: Kulkarni
authors.forename: Monica F
authors.initials: MF
authors.lastname: Brinchmann
authors.forename: Kjetil
authors.initials: K
authors.lastname: Korsnes
authors.forename: Viswanath
authors.initials: V
authors.lastname: Kiron
mesh_terms: D000818:Animals; D004269:DNA, Bacterial / Q000032:analysis; D004587:Electrophoresis, Agar Gel / Q000662:veterinary*; D005393:Fish Diseases / Q000175:diagnosis* / Q000382:microbiology; D005603:Francisella / Q000235:genetics / Q000302:isolation & purification*; D048389:Gadus morhua / Q000382:microbiology*; D016905:Gram-Negative Bacterial Infections / Q000175:diagnosis / Q000382:microbiology / Q000662:veterinary*; D021141:Nucleic Acid Amplification Techniques / Q000662:veterinary; D016133:Polymerase Chain Reaction / Q000662:veterinary; D012680:Sensitivity and Specificity
chemical_list: D004269:DNA, Bacterial