title: Transcriptomic comparison in the leaves of two aspen genotypes having similar carbon assimilation rates but different partitioning patterns under elevated [CO2].
abstract: This study compared the leaf transcription profiles, physiological characteristics and primary metabolites of two Populus tremuloides genotypes (clones 216 and 271) known to differ in their responses to long-term elevated [CO2] (e[CO2]) at the Aspen free-air CO2 enrichment site near Rhinelander, WI, USA. The physiological responses of these clones were similar in terms of photosynthesis, stomatal conductance and leaf area index under e[CO2], yet very different in terms of growth enhancement (0-10% in clone 216; 40-50% in clone 271). Although few genes responded to long-term exposure to e[CO2], the transcriptional activity of leaf e[CO2]-responsive genes was distinctly different between the clones, differentially impacting multiple pathways during both early and late growing seasons. An analysis of transcript abundance and carbon/nitrogen biochemistry suggested that the CO2-responsive clone (271) partitions carbon into pathways associated with active defense/response to stress, carbohydrate/starch biosynthesis and subsequent growth. The CO2-unresponsive clone (216) partitions carbon into pathways associated with passive defense (e.g. lignin, phenylpropanoid) and cell wall thickening. This study indicates that there is significant variation in expression patterns between different tree genotypes in response to long-term exposure to e[CO2]. Consequently, future efforts to improve productivity or other advantageous traits for carbon sequestration should include an examination of genetic variability in CO2 responsiveness.
authors.affiliation: Department of Biological Sciences, University of Alabama, Huntsville, AL 35899, USA.
authors.forename: Leland J
authors.initials: LJ
authors.lastname: Cseke
authors.affiliation: School of Forestry and Natural Resources, University of Georgia, Athens, GA 30602, USA.
authors.forename: Chung-Jui
authors.initials: CJ
authors.lastname: Tsai
authors.affiliation: Environmental Sciences Department, Brookhaven National Laboratory, Upton, NY 11973, USA.|Department of Crop Sciences, University of Illinois at Urbana Champaign, IL 61801, USA.
authors.forename: Alistair
authors.initials: A
authors.lastname: Rogers
authors.affiliation: School of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI 49931, USA.
authors.forename: Matthew P
authors.initials: MP
authors.lastname: Nelsen
authors.affiliation: Department of Biological Sciences, University of Alabama, Huntsville, AL 35899, USA.
authors.forename: Holly L
authors.initials: HL
authors.lastname: White
authors.affiliation: School of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI 49931, USA.
authors.forename: David F
authors.initials: DF
authors.lastname: Karnosky
authors.affiliation: Department of Biological Sciences, University of Alabama, Huntsville, AL 35899, USA.
authors.forename: Gopi K
authors.initials: GK
authors.lastname: Podila
mesh_terms: D002244:Carbon / Q000378:metabolism*; D002245:Carbon Dioxide / Q000494:pharmacology*; D002999:Clone Cells; D020869:Gene Expression Profiling; D018506:Gene Expression Regulation, Plant / Q000187:drug effects* / Q000528:radiation effects; D017343:Genes, Plant / Q000235:genetics; D014644:Genetic Variation / Q000187:drug effects / Q000528:radiation effects; D005838:Genotype; D008027:Light; D009584:Nitrogen / Q000378:metabolism; D009929:Organ Size / Q000187:drug effects / Q000528:radiation effects; D010788:Photosynthesis / Q000187:drug effects / Q000528:radiation effects; D018515:Plant Leaves / Q000187:drug effects* / Q000235:genetics* / Q000528:radiation effects; D018547:Plant Stems / Q000033:anatomy & histology / Q000187:drug effects / Q000528:radiation effects; D032107:Populus / Q000187:drug effects / Q000235:genetics* / Q000502:physiology / Q000528:radiation effects; D012333:RNA, Messenger / Q000235:genetics / Q000378:metabolism; D020133:Reverse Transcriptase Polymerase Chain Reaction; D012621:Seasons; D014158:Transcription, Genetic / Q000187:drug effects / Q000528:radiation effects
chemical_list: D012333:RNA, Messenger; D002245:Carbon Dioxide; D002244:Carbon; D009584:Nitrogen