Biological X-ray absorption spectroscopy and metalloproteomics.
In the past seven years the size of the known protein sequence universe has been rapidly expanding. At present, more then five million entries are included in the UniProtKB/TrEMBL protein database. In this context, a retrospective evaluation of recent X-ray absorption studies is undertaken to assess its potential role in metalloproteomics. Metalloproteomics is the structural and functional characterization of metal-binding proteins. This is a new area of active research which has particular relevance to biology and for which X-ray absorption spectroscopy is ideally suited. In the last three years, biological X-ray absorption spectroscopy (BioXAS) has been included among the techniques used in post-genomics initiatives for metalloprotein characterization. The emphasis of this review is on the progress in BioXAS that has emerged from recent meetings in 2007-2008. Developments required to enable BioXAS studies to better contribute to metalloproteomics throughput are also discussed. Overall, this paper suggests that X-ray absorption spectroscopy could have a higher impact on metalloproteomics, contributing significantly to the understanding of metal site structures and of reaction mechanisms for metalloproteins.
Ascone
Isabella
I
Synchrotron SOLEIL, BP 48, 91192 Gif-sur-Yvette Cedex, France. isabella.ascone@synchrotron-soleil.fr
Strange
Richard
R
D020869:Gene Expression Profiling / Q000379:methods*; D008667:Metalloproteins / Q000032:analysis*; D020543:Proteome / Q000032:analysis*; D013052:Spectrometry, X-Ray Emission / Q000379:methods*
D008667:Metalloproteins; D020543:Proteome