Host-pathogen time series data in wildlife support a transmission function between density and frequency dependence.
A key aim in epidemiology is to understand how pathogens spread within their host populations. Central to this is an elucidation of a pathogen's transmission dynamics. Mathematical models have generally assumed that either contact rate between hosts is linearly related to host density (density-dependent) or that contact rate is independent of density (frequency-dependent), but attempts to confirm either these or alternative transmission functions have been rare. Here, we fit infection equations to 6 years of data on cowpox virus infection (a zoonotic pathogen) for 4 natural populations to investigate which of these transmission functions is best supported by the data. We utilize a simple reformulation of the traditional transmission equations that greatly aids the estimation of the relationship between density and host contact rate. Our results provide support for an infection rate that is a saturating function of host density. Moreover, we find strong support for seasonality in both the transmission coefficient and the relationship between host contact rate and host density, probably reflecting seasonal variations in social behavior and/or host susceptibility to infection. We find, too, that the identification of an appropriate loss term is a key component in inferring the transmission mechanism. Our study illustrates how time series data of the host-pathogen dynamics, especially of the number of susceptible individuals, can greatly facilitate the fitting of mechanistic disease models.
Computational Ecology and Environmental Science Group, Microsoft Research, 7 J J Thompson Avenue, Cambridge CB3 0FB, United Kingdom. matthew.smith@microsoft.com
Matthew J
MJ
Smith
Sandra
S
Telfer
Eva R
ER
Kallio
Sarah
S
Burthe
Alex R
AR
Cook
Xavier
X
Lambin
Michael
M
Begon
D000820:Animal Diseases / Q000635:transmission; D000818:Animals; D003411:Arvicolinae; D015605:Cowpox / Q000635:transmission* / Q000821:virology*; D004196:Disease Outbreaks; D004813:Epidemiology; D020022:Genetic Predisposition to Disease; D054884:Host-Pathogen Interactions; D008962:Models, Theoretical; D009010:Monte Carlo Method; D011156:Population Density; D011157:Population Dynamics; D012621:Seasons; D013045:Species Specificity