The importance of an extra loop in the B-domain of an alpha-amylase from B. stearothermophilus US100.
To provide insight into the potential role of a loop in domain B of several bacterial alpha-amylases, molecular and structural investigation of Bacillus stearothermophilus alpha-amylase (Amy US100) was used as a model. Combination deletion mutants of G(213), I(214) and G(215), described as a loop-forming on the surface bacterial amylases, were subjected to biochemical and structural investigation. Thermoactivity, thermostability as well calcium requirement were studied for each mutant. Thus, deletion of one residue differently affects only the thermostability. Shortening the loop by deletion of G(213)-I(214) or I(214)-G(215) improved the thermostability and reduces calcium requirement. However, the deletion of three residues has a negative effect on thermostability and reduces the optimal temperature by 17 degrees C. The structural investigation showed that stabilizing deletions contribute to reinforce the architecture of domain B and the active site conformation. The deletion of three residues reduces the flexibility of this region and abolishes a denser hydrogen bond network.
Centre de Biotechnologie de Sfax, B.P. 1177, 3018 Sfax, Tunisia.
Bassem
B
Khemakhem
Mamdouh
M
Ben Ali
Nushin
N
Aghajari
Michel
M
Juy
Richard
R
Haser
Samir
S
Bejar
D002118:Calcium / Q000737:chemistry; D002614:Chelating Agents / Q000737:chemistry; D004492:Edetic Acid / Q000737:chemistry; D004795:Enzyme Stability / Q000235:genetics; D001411:Geobacillus stearothermophilus / Q000201:enzymology*; D006358:Hot Temperature; D017434:Protein Structure, Tertiary / Q000235:genetics; D017384:Sequence Deletion; D000516:alpha-Amylases / Q000737:chemistry* / Q000235:genetics
D002614:Chelating Agents; D004492:Edetic Acid; D000516:alpha-Amylases; D002118:Calcium