Halorubrum cibi sp. nov., an extremely halophilic archaeon from salt-fermented seafood.
Strain B31(T) is a Gram-staining-negative, motile, and extremely halophilic archaeon that was isolated from salt-fermented seafood. Its morphology, physiology, biochemical features, and 16S rRNA gene sequence were determined. Phylogenetic analysis of its 16S rRNA gene sequence and composition of its major polar lipids placed this archaeon in the genus Halorubrum of the family Halobacteriaceae. Strain B31(T) showed 97.3, 97.2, and 96.9 % 16S rRNA similarity to the type strains of Halorubrum alkaliphilum, Hrr. tibetense, and Hrr. vacuolatum, respectively. Its major polar lipids were phosphatidylglycerol (PG), phosphatidylglycerol phosphate methyl ester (PGP-Me) and sulfated diglycosyl diether (S-DGD). Genomic DNA from strain B31(T) has a 61.7 mol% G+C content. Analysis of 16S rRNA gene sequences, as well as physiological and biochemical tests, identified genotypic and phenotypic differences between strain B31(T) and other Halorubrum species. The type strain of the novel species is B31(T) (=JCM 15757(T) =DSM 19504(T)).
Department of Biology, Kyung Hee University, Seoul, 130-701, Republic of Korea.
Seong Woon
SW
Roh
Jin-Woo
JW
Bae
D000818:Animals; D019641:DNA, Archaeal / Q000235:genetics; D004275:DNA, Ribosomal / Q000235:genetics; D005285:Fermentation; D055352:Halorubrum / Q000145:classification / Q000235:genetics / Q000302:isolation & purification* / Q000378:metabolism*; D007723:Korea; D008969:Molecular Sequence Data; D033561:Penaeidae; D010802:Phylogeny; D012758:Shellfish / Q000382:microbiology*; D012965:Sodium Chloride / Q000378:metabolism*
D019641:DNA, Archaeal; D004275:DNA, Ribosomal; D012965:Sodium Chloride