On the importance of nuclear quantum motions in near edge x-ray absorption fine structure spectroscopy of molecules.
We report the effects of sampling nuclear quantum motion with path integral molecular dynamics (PIMD) on calculations of the nitrogen K-edge spectra of two isolated organic molecules. s-triazine, a prototypical aromatic molecule occupying primarily its vibrational ground state at room temperature, exhibits substantially improved spectral agreement when nuclear quantum effects are included via PIMD, as compared to the spectra obtained from either a single fixed-nuclei based calculation or from a series of configurations extracted from a classical molecular dynamics trajectory. Nuclear quantum dynamics can accurately explain the intrinsic broadening of certain features. Glycine, the simplest amino acid, is problematic due to large spectral variations associated with multiple energetically accessible conformations at the experimental temperature. This work highlights the sensitivity of near edge x-ray absorption fine structure (NEXAFS) to quantum nuclear motions in molecules, and the necessity of accurately sampling such quantum motion when simulating their NEXAFS spectra.
Schwartz
Craig P
CP
Department of Chemistry, University of California, Berkeley, California 94720, USA.
Uejio
Janel S
JS
Saykally
Richard J
RJ
Prendergast
David
D