title: Characterisation of the effect of a simulated hydrocarbon spill on diazotrophs in mangrove sediment mesocosm.
abstract: An analysis of the effect of an oil spill on mangrove sediments was carried out by contamination of mesocosms derived from two different mangroves, one with a history of contamination and one pristine. The association between N(2) fixers and hydrocarbon degradation was assessed using quantitative PCR (qPCR) for the genes rrs and nifH, nifH clone library sequencing and total petroleum hydrocarbon (TPH) quantification using gas chromatography. TPH showed that the microbial communities of both mangroves were able to degrade the hydrocarbons added; however, whereas the majority of oil added to the mesocosm derived from the polluted mangrove was degraded in the 75 days of the experiment, there was only partially degradation in the mesocosm derived from the pristine mangrove. qPCR showed that the addition of oil led to an increase in rrs gene copy numbers in both mesocosms, having almost no effect on the nifH copy numbers in the pristine mangrove. Sequencing of nifH clones indicated that the changes promoted by the oil in the polluted mangrove were greater than those observed in the pristine mesocosm. The main effect observed in the polluted mesocosm was the selection of a single phylotype which is probably adapted to the presence of petroleum. These results, together with previous reports, give hints about the relationship between N(2) fixation and hydrocarbon degradation in natural ecosystems.
authors.affiliation: Laboratório de Ecologia Microbiana Molecular, Instituto de Microbiologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil. rgtaketani@cena.usp.br
authors.forename: Rodrigo Gouvêa
authors.initials: RG
authors.lastname: Taketani
authors.forename: Henrique Fragoso
authors.initials: HF
authors.lastname: dos Santos
authors.forename: Jan Dirk
authors.initials: JD
authors.lastname: van Elsas
authors.forename: Alexandre Soares
authors.initials: AS
authors.lastname: Rosado
mesh_terms: D001419:Bacteria / Q000145:classification / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism*; D001426:Bacterial Proteins / Q000235:genetics / Q000378:metabolism; D001673:Biodegradation, Environmental; D019015:Geologic Sediments / Q000382:microbiology*; D006838:Hydrocarbons / Q000378:metabolism*; D008969:Molecular Sequence Data; D010088:Oxidoreductases / Q000235:genetics / Q000378:metabolism; D010578:Petroleum / Q000378:metabolism; D010802:Phylogeny; D012988:Soil Microbiology
chemical_list: D001426:Bacterial Proteins; D006838:Hydrocarbons; D010578:Petroleum; D010088:Oxidoreductases; C029130:nitrogenase reductase