title: Mutational analysis of the AtNUDT7 Nudix hydrolase from Arabidopsis thaliana reveals residues required for protein quaternary structure formation and activity.
abstract: Arabidopsis thaliana AtNUDT7, a homodimeric Nudix hydrolase active on ADP-ribose and NADH, exerts negative control on the major signaling complex involved in plant defense activation and programmed cell death. The structural and functional consequences of altering several amino-acid residues of the AtNUDT7 protein have been examined by site-directed mutagenesis, far-UV circular dichroism (CD), attenuated total reflection-Fourier transform infrared (ATR-FTIR) and photon correlation (PCS) spectroscopy, biochemical analysis and protein-protein interaction studies. Alanine substitutions of F73 and V168 disallowed dimer formation. Both the F73A- and V168A-mutated proteins displayed no observable enzymatic activity. Alanine substitution of the V69 residue did not significantly alter the enzyme activity and had no influence on dimer arrangement. The non-conserved V26 residue, used as a negative control, did not contribute to the enzyme quaternary structure or activity. Detailed biophysical characterization of the wild-type and mutant proteins indicates that the mutations do not considerably alter the secondary structure of the enzyme but they affect dimer assembly. In addition, mutating residues V69, F73 and V168 disrupted the binding of AtNUDT7 to the regulatory 14.3.3 protein. These are the first studies of the structure-function relationship of AtNUDT7, a Nudix hydrolase of important regulatory function.
authors.affiliation: Department of Plant Biochemistry, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warszawa, Poland.
authors.forename: Kamil
authors.initials: K
authors.lastname: Olejnik
authors.forename: Danuta
authors.initials: D
authors.lastname: Płochocka
authors.forename: Marcin
authors.initials: M
authors.lastname: Grynberg
authors.forename: Grazyna
authors.initials: G
authors.lastname: Goch
authors.forename: Wiesław I
authors.initials: WI
authors.lastname: Gruszecki
authors.forename: Teresa
authors.initials: T
authors.lastname: Basińska
authors.forename: Elzbieta
authors.initials: E
authors.lastname: Kraszewska
mesh_terms: D048948:14-3-3 Proteins / Q000378:metabolism; D000595:Amino Acid Sequence / Q000235:genetics; D017360:Arabidopsis / Q000201:enzymology* / Q000235:genetics; D029681:Arabidopsis Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D020134:Catalytic Domain / Q000235:genetics*; D002460:Cell Line; D002853:Chromatography, Liquid; D002942:Circular Dichroism; D004926:Escherichia coli; D007700:Kinetics; D008958:Models, Molecular; D008969:Molecular Sequence Data; D016297:Mutagenesis, Site-Directed; D050505:Mutant Proteins / Q000378:metabolism; D055503:Protein Multimerization / Q000235:genetics*; D020836:Protein Structure, Quaternary / Q000235:genetics*; D017433:Protein Structure, Secondary / Q000235:genetics; D011755:Pyrophosphatases / Q000737:chemistry / Q000235:genetics* / Q000302:isolation & purification / Q000378:metabolism*; D011994:Recombinant Proteins / Q000378:metabolism; D012441:Saccharomyces cerevisiae; D016415:Sequence Alignment; D017550:Spectroscopy, Fourier Transform Infrared; D020798:Two-Hybrid System Techniques; D000096964:Nudix Hydrolases
chemical_list: D048948:14-3-3 Proteins; D029681:Arabidopsis Proteins; D050505:Mutant Proteins; D011755:Pyrophosphatases; D011994:Recombinant Proteins; D000096964:Nudix Hydrolases