title: Succession of bacterial populations during plant residue decomposition in rice field soil.
abstract: The incorporation of rice residues into paddy fields strongly enhances methane production and emissions. Although the decomposition processes of plant residues in rice field soil has been documented, the structure and dynamics of the microbial communities involved are poorly understood. The purpose of the present study was to determine the dynamics of short-chain fatty acids and the structure of bacterial communities during residue decomposition in a rice field soil. The soil was anaerobically incubated with the incorporation of rice root or straw residues for 90 days at three temperatures (15, 30, and 45 degrees C). The dynamics of fatty acid intermediates showed an initial cumulative phase followed by a rapid consumption phase and a low-concentration quasi-steady state. Correspondingly, the bacterial populations displayed distinct successions during residue decomposition. Temperature showed a strong effect on the dynamics of bacterial populations. Members of Clostridium (clusters I and III) were most dominant in the incubations, particularly in the early successions. Bacteroidetes and Chlorobi were abundant in the later successions at 15 and 30 degrees C, while Acidobacteria were selected at 45 degrees C. We suggest that the early successional groups are responsible for the decomposition of the easily degradable fraction of residues, while the late successional groups become more important in decomposing the less-degradable or resistant fraction of plant residues. The bacterial succession probably is related to resource availability during residue decomposition. The fast-growing organisms are favored at the beginning, while the slow-growing bacteria are better adapted in the later stages, when substrate availability is limiting.
authors.affiliation: College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China.
authors.forename: Junpeng
authors.initials: J
authors.lastname: Rui
authors.forename: Jingjing
authors.initials: J
authors.lastname: Peng
authors.forename: Yahai
authors.initials: Y
authors.lastname: Lu
mesh_terms: D000693:Anaerobiosis; D001419:Bacteria / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification*; D044822:Biodiversity; D016000:Cluster Analysis; D004269:DNA, Bacterial / Q000737:chemistry / Q000235:genetics; D004275:DNA, Ribosomal / Q000737:chemistry / Q000235:genetics; D005232:Fatty Acids, Volatile / Q000378:metabolism; D008969:Molecular Sequence Data; D012275:Oryza / Q000378:metabolism* / Q000382:microbiology*; D010802:Phylogeny; D018517:Plant Roots / Q000378:metabolism / Q000382:microbiology; D018547:Plant Stems / Q000378:metabolism / Q000382:microbiology; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017422:Sequence Analysis, DNA; D012988:Soil Microbiology; D013696:Temperature
chemical_list: D004269:DNA, Bacterial; D004275:DNA, Ribosomal; D005232:Fatty Acids, Volatile; D012336:RNA, Ribosomal, 16S