Allele frequency of VNTR locus D1S80 observed in Denizli Province of Turkey.
The variable numbers of tandem repeats (VNTR) locus D1S80, located on chromosome 1 (1p35-36), has a repeat unit 16 bp in length, and different numbers of these repeat units have been observed for populations of different origins and ethnicity. We used a molecular identification method based on capillary electrophoresis separation to analyze D1S80 locus polymorphism among 74 subjects from Denizli province, Turkey, finding an amplified fragment length size of 379-635 bp. Allele repeat numbers were deduced from these sizes and sequence comparison. The most common alleles were repeat units 24 (34.3%) and 18 (22.4%), with frequencies of 0.414 and 0.207, respectively. Other alleles were 25 (7.86%), 28 (5.71%), 22 (4.25%), and 29 (2.86%). The allele with 23 repeat units was not observed. Results were in Hardy-Weinberg linkage disequilibrium. Observed heterozygosity was 0.614, and expected heterozygosity was 0.787. Theta(k) value was 4.86 (95% confidence interval limits). Capillary electrophoresis is a powerful approach for accurate identification of VNTR loci, especially for low base pair units like D1S80, for prenatal diagnosis, linkage analysis, forensic identification, paternity testing, anthropological research, and phylogenetic studies.
Köseler
Aylin
A
Department of Biophysics, Faculty of Medicine, Pamukkale University, Denizli, Turkey. akoseler@pau.edu.tr
Atalay
Ayfer
A
Atalay
Erol Omer
EO
D002878:Chromosomes, Human, Pair 1 / Q000235:genetics; D004247:DNA / Q000235:genetics; D019075:Electrophoresis, Capillary; D005787:Gene Frequency; D006801:Humans; D018598:Minisatellite Repeats / Q000235:genetics*; D014421:Turkey
D004247:DNA