title: Genetic detection and characterization of Lujo virus, a new hemorrhagic fever-associated arenavirus from southern Africa.
abstract: Lujo virus (LUJV), a new member of the family Arenaviridae and the first hemorrhagic fever-associated arenavirus from the Old World discovered in three decades, was isolated in South Africa during an outbreak of human disease characterized by nosocomial transmission and an unprecedented high case fatality rate of 80% (4/5 cases). Unbiased pyrosequencing of RNA extracts from serum and tissues of outbreak victims enabled identification and detailed phylogenetic characterization within 72 hours of sample receipt. Full genome analyses of LUJV showed it to be unique and branching off the ancestral node of the Old World arenaviruses. The virus G1 glycoprotein sequence was highly diverse and almost equidistant from that of other Old World and New World arenaviruses, consistent with a potential distinctive receptor tropism. LUJV is a novel, genetically distinct, highly pathogenic arenavirus.
authors.affiliation: Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA. thomas.briese@columbia.edu
authors.forename: Thomas
authors.initials: T
authors.lastname: Briese
authors.forename: Janusz T
authors.initials: JT
authors.lastname: Paweska
authors.forename: Laura K
authors.initials: LK
authors.lastname: McMullan
authors.forename: Stephen K
authors.initials: SK
authors.lastname: Hutchison
authors.forename: Craig
authors.initials: C
authors.lastname: Street
authors.forename: Gustavo
authors.initials: G
authors.lastname: Palacios
authors.forename: Marina L
authors.initials: ML
authors.lastname: Khristova
authors.forename: Jacqueline
authors.initials: J
authors.lastname: Weyer
authors.forename: Robert
authors.initials: R
authors.lastname: Swanepoel
authors.forename: Michael
authors.initials: M
authors.lastname: Egholm
authors.forename: Stuart T
authors.initials: ST
authors.lastname: Nichol
authors.forename: W Ian
authors.initials: WI
authors.lastname: Lipkin
mesh_terms: D000353:Africa, Southern / Q000453:epidemiology; D001117:Arenaviridae Infections / Q000401:mortality / Q000635:transmission / Q000821:virology; D018049:Arenaviruses, Old World / Q000235:genetics* / Q000302:isolation & purification*; D001483:Base Sequence; D003428:Cross Infection; D049810:Genetic Speciation; D016679:Genome, Viral; D006801:Humans; D010802:Phylogeny; D012367:RNA, Viral / Q000235:genetics; D014764:Viral Proteins
chemical_list: D012367:RNA, Viral; D014764:Viral Proteins