title: A theoretical study on interaction of small gold clusters Au(n) (n = 4, 6, 8) with xDNA base pairs.
abstract: xDNA constitutes a novel class of size expanded synthetic nucleic acids in which one of the bases of the base pairs is larger than the natural DNA bases. These expanded bases are called x-bases. In this paper, we investigate the hydrogen bonding characteristics and relevant molecular properties of model complexes (xA...T)-Au(n), (xT...A)-Au(n), (xG...C)-Au(n), and (xC...G)-Au(n) (n = 4, 6, 8) consisting of xDNA base pairs and gold clusters, in order to study the nature of gold-xDNA binding. We offer detailed characterization of their different aspects, viz., structural, electronic and spectroscopic, effect of gold cluster size, aromaticity, and planarity using quantum mechanics based density functional theory (DFT). Significant charge transfer is seen between the gold clusters and x-base pairs. Gold complexation is found to affect the interbase hydrogen bonding in these complexes. In addition to anchor bonds, X-H...Au type of hydrogen bonding interactions are also found to contribute to the gold-base pair binding in these complexes.
authors.affiliation: Center for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad, India.
authors.forename: Purshotam
authors.initials: P
authors.lastname: Sharma
authors.forename: Sitansh
authors.initials: S
authors.lastname: Sharma
authors.forename: Abhijit
authors.initials: A
authors.lastname: Mitra
authors.forename: Harjinder
authors.initials: H
authors.lastname: Singh
mesh_terms: D020029:Base Pairing; D004247:DNA / Q000737:chemistry / Q000235:genetics; D006046:Gold / Q000737:chemistry*; D006860:Hydrogen Bonding; D008962:Models, Theoretical; D015394:Molecular Structure; D053758:Nanoparticles / Q000737:chemistry
chemical_list: D006046:Gold; D004247:DNA