RNA secondary structure analysis using the RNAshapes package.
This unit shows how to use the RNAshapes package for the prediction of the secondary structure of a single RNA sequence using either minimum free energy methods or weighted ensemble information. It also includes a protocol for the consensus prediction of a set of related sequences.
Reeder
Jens
J
University of Colorado, Boulder, Colorado.
Giegerich
Robert
R
Bielefeld University, Bielefeld, Germany.
D020029:Base Pairing; D001483:Base Sequence; D016384:Consensus Sequence; D008958:Models, Molecular; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D012313:RNA / Q000737:chemistry*; D017423:Sequence Analysis, RNA / Q000379:methods; D012984:Software
D012313:RNA