Study of Thermomyces lanuginosa lipase in the presence of tributyrylglycerol and water.
The Thermomyces lanuginosa lipase has been extensively studied in industrial and biotechnological research because of its potential for triacylglycerol transformation. This protein is known to catalyze both hydrolysis at high water contents and transesterification in quasi-anhydrous conditions. Here, we investigated the Thermomyces lanuginosa lipase structure in solution in the presence of a tributyrin aggregate using 30 ns molecular-dynamics simulations. The water content of the active-site groove was modified between the runs to focus on the protein-water molecule interactions and their implications for protein structure and protein-lipid interactions. The simulations confirmed the high plasticity of the lid fragment and showed that lipid molecules also bind to a secondary pocket beside the lid. Together, these results strongly suggest that the lid plays a role in the anchoring of the protein to the aggregate. The simulations also revealed the existence of a polar channel that connects the active-site groove to the outside solvent. At the inner extremity of this channel, a tyrosine makes hydrogen bonds with residues interacting with the catalytic triad. This system could function as a pipe (polar channel) controlled by a valve (the tyrosine) that could regulate the water content of the active site.
Santini
S
S
Center of Numerical Molecular Biophysics, Gembloux Agricultural University, Gembloux, Belgium.
Crowet
J M
JM
Thomas
A
A
Paquot
M
M
Vandenbol
M
M
Thonart
P
P
Wathelet
J P
JP
Blecker
C
C
Lognay
G
G
Brasseur
R
R
Lins
L
L
Charloteaux
B
B
D000595:Amino Acid Sequence; D001203:Ascomycota / Q000201:enzymology*; D001665:Binding Sites; D020134:Catalytic Domain; D005656:Fungal Proteins / Q000737:chemistry*; D006860:Hydrogen Bonding; D008049:Lipase / Q000737:chemistry*; D008958:Models, Molecular; D008969:Molecular Sequence Data; D017434:Protein Structure, Tertiary; D016415:Sequence Alignment; D014280:Triglycerides / Q000737:chemistry*; D014867:Water / Q000737:chemistry*
D005656:Fungal Proteins; D014280:Triglycerides; D014867:Water; D008049:Lipase