title: Distinct role of specific tryptophans in facilitating electron transfer or as [Fe(IV)=O Trp(*)] intermediates in the peroxidase reaction of Bulkholderia pseudomallei catalase-peroxidase: a multifrequency EPR spectroscopy investigation.
abstract: We have characterized the reactive intermediates of the peroxidase-like reaction of Bulkholderia pseudomallei KatG using multifrequency EPR spectroscopy. The aim was to investigate the putative role of tryptophanyl radicals as alternative intermediates to the [Fe(IV)=O Por(*+)] species or as short-lived species involved in superexchange-coupled pathways between redox cofactors. Three distinct sites for the formation of radical intermediates, Trp330, Trp139 and Trp153, were identified using single, double and triple variants of Bulkholderia pseudomallei KatG. The proximal Trp330 is the site for a radical in magnetic interaction with the ferryl heme iron [Fe(IV)=O Trp(*+)], formed at the expense of a short-lived [Fe(IV)=O Por(*+)] species as in the cases of Mycobacterium tuberculosis KatG and cytochrome c peroxidase. Formation of the Trp153 radical at a site close to the enzyme surface crucially depends on the integrity of the H-bonding network of the heme distal side, that includes Trp95, the radical site in the Synechocystis KatG. Accordingly, the extended H-bonding network and Trp94 provide an electron transfer pathway between Trp153 and the heme. The distal tryptophan (Trp111) being part of the KatG-specific adduct required for the catalase-like activity, is involved in facilitating electron transfer for the formation of the Trp139 radical. We propose a comprehensive description of the role of specific Trp residues that takes into account not only the apparent differences in sites for the Trp(*) intermediates in other catalase-peroxidases but also the similar cases observed in monofunctional peroxidases.
authors.affiliation: CNRS URA 2096, CEA, IBITEC, F-91191 Gif-sur-Yvette, France.
authors.forename: Julie
authors.initials: J
authors.lastname: Colin
authors.forename: Ben
authors.initials: B
authors.lastname: Wiseman
authors.forename: Jacek
authors.initials: J
authors.lastname: Switala
authors.forename: Peter C
authors.initials: PC
authors.lastname: Loewen
authors.forename: Anabella
authors.initials: A
authors.lastname: Ivancich
mesh_terms: D001426:Bacterial Proteins / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D016957:Burkholderia pseudomallei / Q000201:enzymology* / Q000235:genetics; D004578:Electron Spin Resonance Spectroscopy / Q000379:methods; D004583:Electrons; D058085:Iron Compounds / Q000737:chemistry / Q000378:metabolism; D008958:Models, Molecular; D016296:Mutagenesis; D010544:Peroxidases / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D014364:Tryptophan / Q000737:chemistry* / Q000378:metabolism
chemical_list: D001426:Bacterial Proteins; D058085:Iron Compounds; D014364:Tryptophan; D010544:Peroxidases; C081610:catalase-peroxidase, bacteria