title: The HCV ARFP/F/core+1 protein: production and functional analysis of an unconventional viral product.
abstract: Hepatitis C virus (HCV) is an enveloped positive-strand RNA virus of the Flaviviridae family. It has a genome of about 9,600 nucleotides encoding a large polyprotein (about 3,000 amino acids) that is processed by cellular and viral proteases into at least 10 structural and nonstructural viral proteins. A novel HCV protein has also been identified by our laboratory and others. This protein--known as ARFP (alternative reading frame protein), F (for frameshift) or core+1 (to indicate the position) protein--is synthesized by an open reading frame overlapping the core gene at nucleotide +1 (core+1 ORF). However, almost 10 years after its discovery, we still know little of the biological role of the ARFP/F/core+1 protein. Abolishing core+1 protein production has no affect on HCV replication in cell culture or uPA-SCID mice, suggesting that core+1 protein is probably not important for the HCV reproductive cycle. However, the detection of specific anti-core+1 antibodies and T-cell responses in HCV-infected patients, as reported by many independent laboratories, provides strong evidence that this protein is produced in vivo. Furthermore, analyses of the HCV sequences isolated from patients with hepatocellular carcinoma and in vitro studies have provided strong preliminary evidence to suggest that core+1 protein plays a role in advanced liver disease and liver cancer. The available in vitro data also suggest that certain core function proteins may depend on production of the core+1 protein. We describe here the discovery of the various forms of the core+1 protein and what is currently known about the mechanisms of their production and their biochemical and functional properties. We also provide a detailed summary of the results of patient-based research.
authors: Molecular Virology Laboratory, Hellenic Pasteur Institute, Athens, Greece. nikiv@pasteur.gr
authors: Niki
authors: N
authors: Vassilaki
authors: Penelope
authors: P
authors: Mavromara
mesh_terms: D000818:Animals; D045744:Cell Line, Tumor; D016368:Frameshift Mutation; D016174:Hepacivirus / Q000235:genetics / Q000502:physiology*; D018936:Hepatitis C Antigens / Q000096:biosynthesis* / Q000502:physiology*; D006801:Humans; D008113:Liver Neoplasms; D051379:Mice; D014758:Viral Core Proteins / Q000096:biosynthesis* / Q000502:physiology*
chemical_list: D018936:Hepatitis C Antigens; D014758:Viral Core Proteins; C433031:hepatitis C protein F, Hepatitis C virus