Bioinformatic characterization of p-type ATPases encoded within the fully sequenced genomes of 26 eukaryotes.
P-type ATPases play essential roles in numerous processes, which in humans include nerve impulse propagation, relaxation of muscle fibers, secretion and absorption in the kidney, acidification of the stomach and nutrient absorption in the intestine. Published evidence suggests that uncharacterized families of P-type ATPases with novel specificities exist. In this study, the fully sequenced genomes of 26 eukaryotes, including animals, plants, fungi and unicellular eukaryotes, were analyzed for P-type ATPases. We report the organismal distributions, phylogenetic relationships, probable topologies and conserved motifs of nine functionally characterized families and 13 uncharacterized families of these enzyme transporters. We have classified these proteins according to the conventions of the functional and phylogenetic IUBMB-approved transporter classification system ( www.tcdb.org , Saier et al. in Nucleic Acids Res 34:181-186, 2006; Nucleic Acids Res 37:274-278, 2009).
Thever
Mark D
MD
Department of Molecular Biology, Division of Biological Sciences, University of California at San Diego, 9500 Gilman Drive, La Jolla, 92093-0116, CA, USA. markthever@gmail.com
Saier
Milton H
MH
D000251:Adenosine Triphosphatases / Q000145:classification / Q000235:genetics*; D000818:Animals; D019295:Computational Biology; D005057:Eukaryotic Cells / Q000378:metabolism*; D006801:Humans; D010802:Phylogeny; D010940:Plant Proteins / Q000145:classification / Q000235:genetics
D010940:Plant Proteins; D000251:Adenosine Triphosphatases