Single-molecule observation of prokaryotic DNA replication.
Recent advances in optical imaging and molecular manipulation techniques have made it possible to observe the activity of individual enzymes and study the dynamic properties of processes that are challenging to elucidate using ensemble-averaging techniques. The use of single-molecule approaches has proven to be particularly successful in the study of the dynamic interactions between the components at the replication fork. In this section, we describe the methods necessary for in vitro single-molecule studies ofprokaryotic replication systems. Through these experiments, accurate information can be obtained on the rates and processivities of DNA unwinding and polymerization. The ability to monitor in real time the progress of a single replication fork allows for the detection of short-lived, intermediate states that would be difficult to visualize in bulk-phase assays.
Tanner
Nathan A
NA
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA.
van Oijen
Antoine M
AM
D017123:Bacteriophage T7 / Q000378:metabolism; D010582:Bacteriophage lambda / Q000378:metabolism; D001483:Base Sequence; D011088:DNA Ligases / Q000378:metabolism; D004261:DNA Replication / Q000502:physiology*; D004269:DNA, Bacterial / Q000096:biosynthesis; D004279:DNA, Viral / Q000096:biosynthesis; D004800:Enzymes, Immobilized; D004926:Escherichia coli / Q000378:metabolism; D009838:Oligodeoxyribonucleotides / Q000737:chemistry / Q000378:metabolism; D011116:Polynucleotide 5'-Hydroxyl-Kinase / Q000378:metabolism; D013379:Substrate Specificity
D004269:DNA, Bacterial; D004279:DNA, Viral; D004800:Enzymes, Immobilized; D009838:Oligodeoxyribonucleotides; D011116:Polynucleotide 5'-Hydroxyl-Kinase; D011088:DNA Ligases