FBA-SimVis: interactive visualization of constraint-based metabolic models.
FBA-SimVis is a VANTED plug-in for the constraint-based analysis of metabolic models with special focus on the visual exploration of metabolic flux data resulting from model analysis. The program provides a user-friendly environment for model reconstruction, constraint-based model analysis, and interactive visualization of the simulation results. With the ability to quantitatively analyse metabolic fluxes in an interactive and visual manner, FBA-SimVis supports a comprehensive understanding of constraint-based metabolic flux models in both overview and detail.


BACKGROUND
Software with manual and tutorials are freely available at http://fbasimvis.ipk-gatersleben.de/
Grafahrend-Belau
Eva
E
Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben and Institute of Computer Science, Martin-Luther-University Halle-Wittenberg, Germany. grafahr@ipk-gatersleben.de
Klukas
Christian
C
Junker
Björn H
BH
Schreiber
Falk
F
D019295:Computational Biology / Q000379:methods*; D016247:Information Storage and Retrieval; D053858:Metabolic Networks and Pathways; D008954:Models, Biological; D012984:Software; D014584:User-Computer Interface