title: Efficient stochastic simulation of reaction-diffusion processes via direct compilation.
abstract: We present the Stochastic Simulator Compiler (SSC), a tool for exact stochastic simulations of well-mixed and spatially heterogeneous systems. SSC is the first tool to allow a readable high-level description with spatially heterogeneous simulation algorithms and complex geometries; this permits large systems to be expressed concisely. Meanwhile, direct native-code compilation allows SSC to generate very fast simulations.
authors: Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. mieszko@csail.mit.edu
authors: Mieszko
authors: M
authors: Lis
authors: Maxim N
authors: MN
authors: Artyomov
authors: Srinivas
authors: S
authors: Devadas
authors: Arup K
authors: AK
authors: Chakraborty
mesh_terms: D000465:Algorithms; D003198:Computer Simulation; D004058:Diffusion; D013269:Stochastic Processes