title: Fine mapping and candidate gene analysis of spd6, responsible for small panicle and dwarfness in wild rice (Oryza rufipogon Griff.).
abstract: Identification of genes in rice that affect production and quality is necessary for improving the critical global food source. CSSL58, a chromosome segment substitution line (CSSL) containing a chromosome segment of Oryza rufipogon in the genetic background of the indica cultivar Teqing showed significantly smaller panicles, fewer grains per panicle, smaller grains and dwarfness compared with the recurrent parent Teqing. Genetic analysis of the BC(4)F(1) and BC(4)F(2) generations, derived from a cross between CSSL58 and Teqing, showed that these traits are controlled by the recessive gene spd6, which mapped to the short arm of chromosome 6. Fine mapping and high-resolution linkage analysis using 24,120 BC(4)F(3) plants and markers flanking spd6 were carried out, and the gene was localized to a 22.4 kb region that contains four annotated genes according to the genome sequence of japonica Nipponbare. Phenotypic evaluation of the nearly isogenic line NIL(spd6) revealed that spd6 from wild rice has pleiotropic effects on panicle number per plant, grain size, grain weight, grain number per panicle and plant height, suggesting that this gene might play an important role in the domestication of rice. The discovery of spd6 may ultimately be useful for the design and breeding of crops with high grain yield and quality.
authors: National Key Laboratory of Plant Molecular Genetics, Shanghai Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Graduate School of the Chinese Academy of Science, 200032 Shanghai, China.
authors: Jun-Xiang
authors: JX
authors: Shan
authors: Mei-Zhen
authors: MZ
authors: Zhu
authors: Min
authors: M
authors: Shi
authors: Ji-Ping
authors: JP
authors: Gao
authors: Hong-Xuan
authors: HX
authors: Lin
mesh_terms: D020029:Base Pairing / Q000235:genetics; D017343:Genes, Plant; D007178:Inbreeding; D012275:Oryza / Q000033:anatomy & histology* / Q000235:genetics*; D010641:Phenotype; D020161:Physical Chromosome Mapping; D011058:Pollen / Q000235:genetics; D019655:Quantitative Trait, Heritable