Effect of active-site mutation at Asn67 on the proton transfer mechanism of human carbonic anhydrase II.
The rate-limiting proton transfer (PT) event in the site-specific mutant N67L of human carbonic anhydrase II (HCA II) has been examined by kinetic, X-ray, and simulation approaches. The X-ray crystallography studies, which were previously reported, and molecular dynamics (MD) simulations indicate that the proton shuttling residue, His64, predominantly resides in the outward orientation with a significant disruption of the ordered water in the active site for the dehydration pathway. While disorder is seen in the active-site water, water cluster analysis indicates that the N67L mutant may form water clusters similar to those seen in the wild-type (WT). For the hydration pathway of the enzyme, the active site water cluster analysis reveals an inability of the N67L mutant to stabilize water clusters when His64 is in the inward orientation, thereby favoring PT when His64 is in the outward orientation. The preference of the N67L mutant to carry out the PT when His64 is in the outward orientation for both the hydration and dehydration pathway is reasoned to be the main cause of the observed reduction in the overall rate. To probe the mechanism of PT, solvent H/D kinetic isotope effects (KIEs) were experimentally studied with catalysis measured by the exchange of (18)O between CO(2) and water. The values obtained from the KIEs were determined as a function of the deuterium content of solvent, using the proton inventory method. No differences were detected in the overarching mechanism of PT between WT and N67L HCA II, despite changes in the active-site water structure and/or the orientation of His64.
Maupin
C Mark
CM
Center for Biophysical Modeling and Simulation and the Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, USA.
Zheng
Jiayin
J
Tu
Chingkuang
C
McKenna
Robert
R
Silverman
David N
DN
Voth
Gregory A
GA
D001216:Asparagine / Q000235:genetics*; D024402:Carbonic Anhydrase II / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism*; D020134:Catalytic Domain / Q000235:genetics; D018360:Crystallography, X-Ray; D041961:Deuterium Exchange Measurement; D004795:Enzyme Stability / Q000235:genetics; D006639:Histidine / Q000737:chemistry; D006801:Humans; D007700:Kinetics; D007930:Leucine / Q000235:genetics; D016297:Mutagenesis, Site-Directed; D018892:Proton-Motive Force / Q000235:genetics; D013816:Thermodynamics; D014867:Water / Q000737:chemistry
D014867:Water; D006639:Histidine; D001216:Asparagine; D024402:Carbonic Anhydrase II; D007930:Leucine