Prot-2S: a new python web tool for protein secondary structure studies.
Prot-2S is a bioinformatics web application devised to analyse the protein chain secondary structures (2S) (http:/ /www.requimte.pt:8080/Prot-2S/). The tool is built on the RCSB Protein Data Bank PDB and DSSP application/files and includes calculation/graphical display of amino acid propensities in 2S motifs based on any user amino acid classification/code (for any particular protein chain list). The interface can calculate the 2S composition, display the 2S subsequences and search for DSSP non-standard residues and for pairs/triplets/quadruplets (amino acid patterns in 2S motifs). This work presents some Prot-2S applications showing its usefulness in protein research and as an e-learning tool as well.
Munteanu
Cristian R
CR
Faculty of Science, REQUIMTE/University of Porto, Department of Chemistry, Rua Campo Alegre 687, 4169-007 Porto, Portugal. muntisa@gmail.com
Magalhães
Alexandre L
AL
D030562:Databases, Protein; D020407:Internet; D017433:Protein Structure, Secondary; D011506:Proteins / Q000737:chemistry*; D020539:Sequence Analysis, Protein; D012984:Software
D011506:Proteins